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#2 Hierarchical view locks up
The Hierarchical view locks up when the sort column function is used on large projects (50,000+ LOC). After analyzing a project the Hierarchical view the displayed automatically. To find the "next" class in a large project it is necessary to click on the "mark" column to bring them to the top of the list. This can only be done once or twice before Eclipse locks up and must be restarted.
The bug doesn't always happen. It is possible to use the Hierarchical view on a very large project without issue. Although, the issues arises more often then not. A memory leak is suspected, however, in my experience Eclipse is not using all of its alloted memory when it locks up. The CPU usage is very high. This points to an infinite loop.