[Joelib-devel] Missing optional CDK for 2D layout

[Joerg K. W. <we...@in...>]

Hello,

> But now there is another problem: I can't find org.openscience.cdk package.
> Search in Google gave a few dead links and a few pages with documentation
> but not the package itself...
Download from SourceForge:
http://sourceforge.net/project/showfiles.php?group_id=20024
http://sourceforge.net/projects/cdk/

They use the ant build tool, also.
For further request it would be nice to use the JOELib-devel 
(recommended, and cc adress) or JOELib-help mailing list.

Download CDK and call:
cdk>ant dist
This generates a patch Exception and complains missing jmol classes, but 
don't care about such things.
Please contact for further CDK question Egon Willighagen (CDK Admin).

Copy the generated .jar files in the cdk/dist/jar directory to joelib/lib.

Copy additionally the JSX.jar from cdk/jar to joelib/lib.

Then recompile JOELib.

joelib/ant> ant compile
or
joelib> sh build.sh compile

Now the CDK classes should be recognized and the CDKTools should be 
compiled also.

Then try:
joelib/ant> ant LayoutTest
or
joelib> sh build.sh LayoutTest

> Sorry for inconvenience...

Was me a pleasure ...

Regards, Joerg

> 
> Andrei Douglas
> 
> 
>>Hello Mr. Douglas,
>>
>>
>>>Class CDKTools, declared to be in joelib.util package, doesn't exist
> 
> there
> 
>>>(in joelib.jar).
>>>What would be a reason for that?
>>
>>The sources are definitely available in the CVS:
>>
> 
> http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/joelib/joelib/src/joelib/util
> /
> 
>>Eventually i've made a mistake in the source distribution, i don't
>>believe that, but i will check it.
>>If JOELib doesn't find the required CDK classes the CDKTool class will not
>>be build !!!
>>
>>
>>>Sincerely Yours,
>>>Andrei Douglas
>>
>>CDK is really optional and can be used for 2D layout, but you can also use
>>ChemAxon marvin classes for such a task !
>>
>>Regards, Joerg K. Wegner
>>
>>---
>>Dipl. Chem. Joerg K. Wegner
>>Univ. Tuebingen, Computer Architecture, Sand 1, D-72076 Tuebingen, Germany
>>Tel. (+49/0) 7071 29 78970, Fax (+49/0) 7071 29 5091
>>E-Mail: mailto:we...@in...
>>WWW:    http://www-ra.informatik.uni-tuebingen.de
>>
>>
>>
> 
> 
> 


-- 
Dipl. Chem. Joerg K. Wegner
Univ. Tuebingen, Computer Architecture, Sand 1, D-72076 Tuebingen, Germany
Tel. (+49/0) 7071 29 78970, Fax (+49/0) 7071 29 5091
E-Mail: mailto:we...@in...
WWW:    http://www-ra.informatik.uni-tuebingen.de