[Joelib-help] SMARTS matching problem

[Rajarshi G. <raj...@pr...>]

Hi, I have a SDF file whose SMILES representation generated by Joelib2
is 

CCCCNC(=O)n1c(nc2ccccc12)NC(=O)OC

I'm running the  SMARTSMatchingExample.java code  from the JOELib
distribution and searching for the pattern: [$([H][NX3H1])]

This should give me two hits but instead I the program says that the
pattern is not in found in the file. 

(I set joelib2.smarts.SMARTSParser.anyRecognizesExpliciteHydrogens
property to true and recompiled JOELib )

Does anybody have any pointers as to what might be wrong?
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Rajarshi Guha <rx...@ps...> <http://jijo.cjb.net>
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How I wish I were what I was when I wished I were what I am.