Re: [Joelib-help] Parameterize the image output

[Joerg K. W. <we...@in...>]

Dear Christophe JOASSARD,

the default properties are defined in joelib/src/joelib.properties.

If the following list does not fulfill your requirements (e.g. SMARTS 
highlighting) you should implement your own wrapper to the 
joelib.gui.render.Mol2Image class. See also io/types/BMP, io/types/GIF 
and io/types/PDF for more details.

##############################################################################
# 2D rendering options
##############################################################################
joelib.gui.render.Renderer2DModel.bond.length=30.0
joelib.gui.render.Renderer2DModel.bond.distance=6.0
joelib.gui.render.Renderer2DModel.bond.width=2.0
joelib.gui.render.Renderer2DModel.drawNumbers=false
joelib.gui.render.Renderer2DModel.useKekuleStructure=true
joelib.gui.render.Renderer2DModel.showEndCarbons=true
joelib.gui.render.Renderer2DModel.atomColoring=false
joelib.gui.render.Renderer2DModel.drawCarbonAtoms=false
joelib.gui.render.Renderer2DModel.orthoLineOffset=20
joelib.gui.render.Renderer2DModel.arrowOffset=10
joelib.gui.render.Renderer2DModel.arrowSize=5

joelib.gui.render.Renderer2DModel.background.color.r=255
joelib.gui.render.Renderer2DModel.background.color.g=255
joelib.gui.render.Renderer2DModel.background.color.b=255

joelib.gui.render.Renderer2DModel.foreground.color.r=0
joelib.gui.render.Renderer2DModel.foreground.color.g=0
joelib.gui.render.Renderer2DModel.foreground.color.b=0

joelib.gui.render.Renderer2DModel.highlight.color.r=255
joelib.gui.render.Renderer2DModel.highlight.color.g=0
joelib.gui.render.Renderer2DModel.highlight.color.b=0

joelib.gui.render.Renderer2DModel.number.color.r=0
joelib.gui.render.Renderer2DModel.number.color.g=0
joelib.gui.render.Renderer2DModel.number.color.b=255

joelib.gui.render.Renderer2DModel.conjugatedRing.color.r=0
joelib.gui.render.Renderer2DModel.conjugatedRing.color.g=0
joelib.gui.render.Renderer2DModel.conjugatedRing.color.b=0

joelib.gui.render.Renderer2DModel.arrow.color.r=0
joelib.gui.render.Renderer2DModel.arrow.color.g=255
joelib.gui.render.Renderer2DModel.arrow.color.b=0

joelib.gui.render.Renderer2DModel.orthogonalLine.color.r=0
joelib.gui.render.Renderer2DModel.orthogonalLine.color.g=0
joelib.gui.render.Renderer2DModel.orthogonalLine.color.b=255


> We have tested your java component to convert molfile to an image and we wish to know if we can parameterize easily :
>   a.. the background color,
> 
>   b.. the chemical representation (display or not hetero,...)...
> How can we do that ?
> 
> regards
> 
> 
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-- 
Dipl. Chem. Joerg K. Wegner
Center of Bioinformatics Tuebingen (ZBIT)
Department of Computer Architecture
Univ. Tuebingen, Sand 1, D-72076 Tuebingen, Germany
Phone: (+49/0) 7071 29 78970
Fax: (+49/0) 7071 29 5091
E-Mail: mailto:we...@in...
WWW:    http://www-ra.informatik.uni-tuebingen.de
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