Re: [Joelib-help] tests under the 2004-01-16 release?

[Joerg W. <we...@in...>]

Hi,

i will check the settings in the ant build file for creating a binary
distribution.
I will have a look at the descriptor informations. In fact, these warnings
are not critical, but if these informations (if available) can be used to
show informations about the calculation rule used. So i will have a look
at the documentation, which is not up-to-date ... one step after another.

The descriptor informations need to be generateed from DocBook XML and i
will fix this as soon as possible.

The missing documentation was caused by the new descriptor calculation
methods, which requests documentation to force developers (here: ME!) to
add informations for these classes. So other users can understand these
methods without forced to go into the source code.

The directory structures has not changed, but i moved these classes from
our internal JCompChem library to JOELib, so it could be possible, that i
missed to change the description path for the new descriptor calculation
facilities.

Regards, Joerg

On Fri, 30 Jan 2004, will welch wrote:

> hi,
> i just pulled down the 2004-01-16 distributions from sourceforge, and 
> have been trying to run the very first thing in the readme.txt file:
> 
> sh convert.sh joelib/test/test.mol
> 
> looks like the test directory wasn't included in the binary dist, so i 
> pulled down the source distro and grabbed it from there. now when i run 
> i get a bunch of warnings of the form:
> 
> 20:35:58 [WARN ] joelib.desc.DescriptorHelper             - HTML  
> description is missing for joelib.desc.types.BurdenModifiedEigenvalues 
> in docs/desc/BurdenModifiedEigenvalues
> 20:35:58 [WARN ] joelib.desc.DescriptorHelper             - HTML  
> description is missing for 
> joelib.desc.types.GlobalTopologicalChargeIndex in 
> docs/desc/GlobalTopologicalChargeIndex
> 20:35:58 [WARN ] joelib.desc.DescriptorHelper             - HTML  
> description is missing for 
> joelib.desc.types.WeightedBurdenModifiedEigenvalues in 
> docs/desc/WeightedBurdenModifiedEigenvalues
> 
> looks to me like the desired files actually live in 
> docs/api/joelib/desc rather than docs/desc. is this the expected 
> behavior, or am i losing to some kind of bad environment variable 
> setting, or did the directory structure just get rearranged with the 
> current release and something's out of date with respect to that?
> 
> -- will
> 
> Will Welch
> 650 Second Street #203
> San Francisco, CA 94107
> ph: 415-546-9172
> 
> 
> 
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Dipl. Chem. Joerg K. Wegner
Center of Bioinformatics Tuebingen (ZBIT)
Department of Computer Architecture
Univ. Tuebingen, Sand 1, D-72076 Tuebingen, Germany
Phone: (+49/0) 7071 29 78970
Fax: (+49/0) 7071 29 5091
E-Mail: mailto:we...@in...
WWW:    http://www-ra.informatik.uni-tuebingen.de
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