joelib-help

[Joelib-help] Set properties of a Renderer2DModel

[Andreas M. <ma...@in...>]

Hi all,

there is a possibility to set default values in joelib.gui.render.Renderer2DModel.java, but changes lead to no effect.
However, if I change settings in joelib.gui.render.MoleculeViewer2D.java in the 

public static void display(JOEMol molecule, String _title,
        JOESmartsPattern smarts, String eTransfer, String retroSynth,
        String conjRing, String labels)

routine via for example

r2dm.setDrawNumbers(true);

it works, at least for some properties (unfortunately not for .useKekuleStructure, which I'd like to use).
Sincerely,

Andi

Re: [Joelib-help] Set properties of a Renderer2DModel

[Joerg K. W. <we...@in...>]

Hi Andreas,

it will work for more parameters if you do not work with a static 
environment.

So use:
MoleculeViewer2D viewer = new MoleculeViewer2D();
Renderer2DModel model = viewer.getRenderer2DModel();

then try:
boolean myKekuleFlag=true;
model.setKekuleStructure(myKekuleFlag);

Kind regards, Joerg
-- 
Dipl. Chem. Joerg K. Wegner
Center of Bioinformatics Tuebingen (ZBIT)
Department of Computer Architecture
Univ. Tuebingen, Sand 1, D-72076 Tuebingen, Germany
Phone: (+49/0) 7071 29 78970
Fax: (+49/0) 7071 29 5091
E-Mail: mailto:we...@in...
WWW:    http://www-ra.informatik.uni-tuebingen.de
--
Never mistake motion for action.
                                     (E. Hemingway)

Never mistake action for meaningful action.
                                (Hugo Kubinyi,2004)

Re: [Joelib-help] Set properties of a Renderer2DModel

[Andreas M. <ma...@in...>]

On Mon, Jun 21, 2004 at 04:22:58PM +0200, Joerg K. Wegner wrote:
> Hi Andreas,
> 
> it will work for more parameters if you do not work with a static 
> environment.
> 
> So use:
> MoleculeViewer2D viewer = new MoleculeViewer2D();
> Renderer2DModel model = viewer.getRenderer2DModel();
> 
> then try:
> boolean myKekuleFlag=true;
> model.setKekuleStructure(myKekuleFlag);


boolean myKekuleFlag=true;
boolean myDrawNumbersFlag=true;
model.setKekuleStructure(myKekuleFlag);
model.setDrawNumbers(myDrawNumbersFlag);
viewer.molecule=mol;
viewer.display();

I use this, but it opens just a blank window. What should I do to display it?
Thanks,

Andi

Re: [Joelib-help] Set properties of a Renderer2DModel

[Joerg K. W. <we...@in...>]

Hi Andreas,

> boolean myKekuleFlag=true;
> boolean myDrawNumbersFlag=true;
> model.setKekuleStructure(myKekuleFlag);
> model.setDrawNumbers(myDrawNumbersFlag);
o.k.

> viewer.molecule=mol;
> viewer.display();
NO, storing object and render objects are not the same !

try:
RenderingAtoms ratoms=viewer.getAtomContainer();
ratoms.add(mol);
viewer.display();

Kind regards, Joerg
-- 
Dipl. Chem. Joerg K. Wegner
Center of Bioinformatics Tuebingen (ZBIT)
Department of Computer Architecture
Univ. Tuebingen, Sand 1, D-72076 Tuebingen, Germany
Phone: (+49/0) 7071 29 78970
Fax: (+49/0) 7071 29 5091
E-Mail: mailto:we...@in...
WWW:    http://www-ra.informatik.uni-tuebingen.de
--
Never mistake motion for action.
                                     (E. Hemingway)

Never mistake action for meaningful action.
                                (Hugo Kubinyi,2004)