Hi Nicolas,
sorry :-)
1. CDK has implemented it's own logging implementation (not
standard-log4j), so this can not cause the problem, i think.
2. ant is part of JOELib: simply try:
joelib> sh build.sh compile or
joelib> sh build.sh dist
eventually you must set the base directory with
setenv JOELIBDIR yourBase/joelib
or
export JOELIBDIR=yourBase/joelib
if you're a bash user
3. the java-property-files
joelib.properties
log4j.properties
should be in the base classpath or in the .jar file
Have you copied them also to your CLASS_PATH directory?
Example in log4j.properties:
log4j.category.joelib.data.JOEAromaticTyper=ERROR
So only error are printed:
Try:
log4j.category.joelib.data.JOEAromaticTyper=DEBUG
and also DEBUG messages wil be shown.
Much more screen-filling are things like:
log4j.category.joelib.smarts.JOESmartsPattern=DEBUG
log4j.category.joelib.smarts.JOESSMatch=DEBUG
log4j.category.joelib.smarts.ParseSmart=DEBUG
or
log4j.category.joelib.molecule.JOEMol=DEBUG
I know that dependencies are not easy, but on the other side there is a
huge benefit from using default open-source-packages, so be patient and
try it from different directions ...
Kind regards, Joerg
> I've tried to update all my classes this morning (log4j and JOELib),
> but the result is the same. I haven't any ANT installation so I can't build
> anything for the moment. If I've really need this new CDK update, I'll
> install ANT correctly. However, what I don't understand is the first time I
> would launch CDK and JOELib Classes, I 've just make a copy of all JOELib
> Classes and put them in my CLASS_PATH directory. I have also put the log4j
> classes in org/apache/ dir. And all ran correctly. Now, I have just put a
> new version of CDK, and I have these errors messages. Moreover, I'm not an
> expert in logging methods, so it's difficult for me to set params like you
> said (switch on/off info/warn/error etc...).
>
> I'll see following my needs what I can realy do with that pb.
>
> Thanks,
> Nico
>
--
Dipl. Chem. Joerg K. Wegner
Center of Bioinformatics Tuebingen (ZBIT)
Department of Computer Architecture
Univ. Tuebingen, Sand 1, D-72076 Tuebingen, Germany
Phone: (+49/0) 7071 29 78970
Fax: (+49/0) 7071 29 5091
E-Mail: mailto:we...@in...
WWW: http://www-ra.informatik.uni-tuebingen.de
--
Never mistake motion for action.
(E. Hemingway)
Never mistake action for meaningful action.
(Hugo Kubinyi,2004)
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