The download can be found here:
And part of the diff for Atom.java is:
+ // added by JLM 06-Mar 06
+ public ChiralityInfo getChiralityInfo();
+ public void setChiralityInfo(ChiralityInfo chiralityInfo);
+ public void updateChiralityInfo(Map<Integer, Integer> conversionTable);
+ public void reorderChiralityInfo(List<Integer> newIndexes);
+ public void assignChiralityInfo();
I think it would be good to talk to those guys in Nottingham and see if these patches can be applied 'upstream' too.
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