Re: [Jmol-users] Jmol 16.3.35/16.3.36

[Robert H. <ha...@st...>]

Fantastic.

The issue you see with the arrow is that if you have an atom selected, JSME
reports a SMILES with a marker [..:1] for the selected atoms.  This is
(perhaps no longer) accepted by NCI/CADD.

I have fixed that, but I see another issue that has to do with the "Enable
Editing" option.

On Sun, Nov 9, 2025 at 11:17 AM Angel Herraez <ang...@ua...> wrote:

> Hi Bob
> I retrieved Jmol-16.3.35-binary.zip and JSME_2024-04-29.zip and run tests
> form local disk. All these are working as far as I can see:
>
> jsme.htm
> jsmetest.htm
> jsmetest2.htm
> jsmetest3.htm
> jsv.htm
> jsv_jme.htm
>
> In the last one, enabling the edit checkbox and using the atom selection
> (red halo), clicking on the arrow towards JSV brings an error about access
> to NCI server, but it does the same in
> https://chemapps.stolaf.edu/jmol/jsmol/jsv_jme.htm
> So I assume it is a temporary issue with NCI
>
>
>  Dr. Angel Herráez
>  Biochemistry and Molecular Biology,
>  Dept. of Systems Biology, University of Alcalá
>  E-28805 Alcalá de Henares  (Madrid), Spain
>
> ------------------------------
> *De:* Robert Hanson via Jmol-users <jmo...@li...>
> *Enviado:* viernes, 7 de noviembre de 2025 18:31
> *Para:* jmo...@li... <jmo...@li...
> >
> *Cc:* Robert Hanson <ha...@st...>
> *Asunto:* Re: [Jmol-users] Jmol 16.3.35/16.3.36
>
> *ATENCIÓN*: Este correo electrónico se envió desde fuera de la UAH. No
> haga clic en enlaces ni abra archivos adjuntos a menos que reconozca al
> remitente y sepa que el contenido es seguro.
> Thanks for that reminder. Every once in a while I have considered that and
> worried that my hacks in that code won't be reproducible. But you are
> right. We should do that. Can you help me with that? Take a local jsmol
> unzipped directory and do the replacement, and see if the various JSME test
> pages still work. The one I am thinking of is the page jsv_jme.htm with the
> "enable editing" and blue selection dot.
>
> [image: image.png]
>
>
>
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-- 
Robert M. Hanson
Professor of Chemistry, Emeritus
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900

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