Re: [Jmol-users] Jmol integration

[Vincent Le G. <vin...@un...>]

> The time here is 1400 so I am going to take a nap. When you post your code
> pls include the echo report that includes the version and OS info. I will
> have a look at this again tomorrow if no one else has provided the answer.

OS: linux ubuntu last version
Jmol version: 11.9.6

Here is the code, it's currently really basic & simple.

public class JmolPanel extends JPanel
{
     private JmolViewer viewer;
     private JmolPopup popup;
     private JmolAdapter adapter;

     public JmolEvolvedPanel() {
         adapter = new SmarterJmolAdapter();
         viewer = new Viewer(this, adapter);
         popup = JmolPopup.newJmolPopup(viewer, true, null, true);
     }

     public void setStructure(Structure struct) {
         String pdbstr = struct.toPDB();
         viewer.openStringInline(pdbstr);

         String strError = viewer.getErrorMessage();
         if (strError != null) {
             System.out.println("Error  in jmol: "+strError);
         }

         popup.updateComputedMenus();
     }

     public void executeCmd(String rasmolScript) {
         viewer.evalString(rasmolScript);
     }

     final Dimension currentSize = new Dimension();
     final Rectangle rectClip = new Rectangle();

     @Override
     public void paint(Graphics g) {
         getSize(currentSize);
         g.getClipBounds(rectClip);
         viewer.renderScreenImage(g, currentSize, rectClip);
     }
}