Re: [Jmol-users] Selecting atoms in one model using distance from second model

[Bob H. <ha...@st...>]

Ravi, lots of interesting questions here.

Ravi M wrote:

> Hi All,
>          I have loaded two models in jmol, and did "model 
> All;display(*/1, */2);" I was wondering if it is possible to select 
> atoms in model 1 which are at  certain distance from atoms in model 2.
>
model 0

should be all you need, but what you write is fine.

> Another issue I am having is that if I have multiple models loaded in 
> JMOL and if I use "hide *.CA/1" then it is display all the models. For 
> eg: if I have loded two file, 1.pdb, 2.sdf
>
> load "fileset" " 1.pdb" "2.sdf"; model All;display(*/1, */2.1);hide 
> [LIG]/1;
>

> when I do this, then all the models get displayed. But when I remove 
> "hide [LIG]/1" everthing works. Could somebody tell me what I am doing 
> wrong ? (please note, [LIG] is a residue name in 1.pdb)
>
Are you sure that there is a group with name LIG ? That looks suspicious 
to me. If LIG does not exist, then you are "hiding nothing" -- and all 
models get displayed.

Could be a bug in an older version of Jmol. What version are you using?


Bob Hanson