Re: [Jmol-developers] Exception reading a PDB file

[Miguel <mi...@jm...>]

> I just tried to read samples/pdb/fullRhinovirus.pdb.gz into Jmol.
> Immediately got an exception :
> java.lang.StringIndexOutOfBoundsException: String index out of range: 1=
6
>  at java.lang.String.charAt(String.java:444)
>  at org.jmol.adapter.smarter.PdbReader.atom(PdbReader.java:119)
>  at
> org.jmol.adapter.smarter.PdbReader.readAtomSetCollection(PdbReader.java=
:57)
>  at org.jmol.adapter.smarter.Resolver.resolve(Resolver.java:57)

Not good ... I will take a look.

(This is *not* the problem that you uncovered, but be advised that the
fullRhinovirus has a large number of atoms (200k?), so you need to give
your java virtual machine more memory on the command line)


Miguel