From: Alexander R. <ale...@we...> - 2011-09-08 09:20:28
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Hi, In the Jmol application there is a button 'Select a set of atoms using "SHIFT-LEFT-DRAG".'. Can you activate this way of selecting atoms in the applet somehow via a script command? Best Alexander |
From: A. H. <ang...@ua...> - 2011-09-08 09:35:28
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Alexander, have you chcked "set picking" ? maybe that |
From: Alexander R. <ale...@we...> - 2011-09-08 09:51:58
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Hi, I have looked at the diverse 'set picking' options and also the jmol-actions for the bind command, but I haven't found something similar to the application button were you can span a rectangle with your left mouse button pressed down while holding the shift key to select all atoms inside the spanned rectangle. Alex ----- Ursprüngliche Mail ----- > Von: "Angel Herráez" <ang...@ua...> > An: jmo...@li... > Gesendet: Donnerstag, 8. September 2011 11:36:09 > Betreff: Re: [Jmol-users] 'Select a set of atoms using "SHIFT-LEFT-DRAG"' in the applet? > Alexander, have you chcked "set picking" ? maybe that > > > ------------------------------------------------------------------------------ > Doing More with Less: The Next Generation Virtual Desktop > What are the key obstacles that have prevented many mid-market > businesses > from deploying virtual desktops? How do next-generation virtual > desktops > provide companies an easier-to-deploy, easier-to-manage and more > affordable > virtual desktop model.http://www.accelacomm.com/jaw/sfnl/114/51426474/ > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users |
From: Martin H. <ma...@bl...> - 2011-10-27 15:52:53
|
Dear List Is it possible that rotateAllowSelected is not working correctly in Jmol 12.3.1? I set "allowRotateSelected True" and try to rotate the molecule with <ALT>+<LEFT_MOUSE> in the applet, however, it only is rotated around an invisible axis (i.e. in two dimensions), not freely. Does anyone see the same thing? I think there was recently a question about this on the mailing list, however I couldnt find it anymore, so sorry for the double post Thanks for any hints on this. Martin |
From: Robert H. <ha...@st...> - 2011-10-27 17:40:53
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The documentation is still messed up. You need to also have: set dragSelected in addition to set allowRotateSelected. Then in addition, alt-shift-left-drag translates. On Thu, Oct 27, 2011 at 10:52 AM, Martin Hediger <ma...@bl...> wrote: > Dear List > Is it possible that rotateAllowSelected is not working correctly in Jmol > 12.3.1? > I set "allowRotateSelected True" and try to rotate the molecule with > <ALT>+<LEFT_MOUSE> in the applet, however, it only is rotated around an > invisible axis (i.e. in two dimensions), not freely. > Does anyone see the same thing? I think there was recently a question > about this on the mailing list, however I couldnt find it anymore, so > sorry for the double post > > Thanks for any hints on this. > Martin > > > ------------------------------------------------------------------------------ > The demand for IT networking professionals continues to grow, and the > demand for specialized networking skills is growing even more rapidly. > Take a complimentary Learning@Cisco Self-Assessment and learn > about Cisco certifications, training, and career opportunities. > http://p.sf.net/sfu/cisco-dev2dev > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |
From: Martin H. <ma...@bl...> - 2011-10-28 15:35:04
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Thanks Bob And I'm starting to see the changing coordinates in a textarea. I'll be updating the list how i did it, in case anyone is interested. Martin Am 27.10.11 19:40, schrieb Robert Hanson: > The documentation is still messed up. You need to also have: > > set dragSelected > > in addition to set allowRotateSelected. > > Then in addition, alt-shift-left-drag translates. > > > On Thu, Oct 27, 2011 at 10:52 AM, Martin Hediger <ma...@bl... > <mailto:ma...@bl...>> wrote: > > Dear List > Is it possible that rotateAllowSelected is not working correctly > in Jmol > 12.3.1? > I set "allowRotateSelected True" and try to rotate the molecule with > <ALT>+<LEFT_MOUSE> in the applet, however, it only is rotated > around an > invisible axis (i.e. in two dimensions), not freely. > Does anyone see the same thing? I think there was recently a question > about this on the mailing list, however I couldnt find it anymore, so > sorry for the double post > > Thanks for any hints on this. > Martin > |
From: Mio_libero <pin...@li...> - 2011-10-30 16:57:03
|
Hi, friends, i am rewriting a page that shows the free rotation around the c2-c3 bond of butane while the energy value is diplayed are in messagebox area and grph too is shown below as in this page <http://pinostriccoli.altervista.org/?p=2812> This page works locally with Jmol 12.2. from my site it is not work. I cannot find the error. Can anybody help me? Pino |
From: Robert H. <ha...@st...> - 2011-10-30 17:22:39
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I like the dots. Very good idea. Check the JavaScript error console. Somehow your editor threw in <p> within the JavaScript. Just hand edit it. Surely you can't have this: <script language="JavaScript"> //this callback function interfaces between jmol and the energy graph function testCallback2(jmolApp,frameNumber){ j=frameNumber document.form1.messageboard.value = "Energia = " + energyArray[j] + " kcal/mol"; document.graph.src=imageArray[j].src }</p> <p><span id="more-2812"></span></p> <p>var imageArray = new Array(); var image2Array = new Array(); On Sun, Oct 30, 2011 at 11:56 AM, Mio_libero <pin...@li...>wrote: > Hi, friends, i am rewriting a page that shows the free rotation around > the c2-c3 bond of butane while the energy value is diplayed are in > messagebox area and grph too is shown below as in this page<http://pinostriccoli.altervista.org/?p=2812> > This page works locally with Jmol 12.2. from my site it is not work. I > cannot find the error. Can anybody help me? > Pino > > > ------------------------------------------------------------------------------ > Get your Android app more play: Bring it to the BlackBerry PlayBook > in minutes. BlackBerry App World™ now supports Android™ Apps > for the BlackBerry® PlayBook™. Discover just how easy and simple > it is! http://p.sf.net/sfu/android-dev2dev > > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |
From: Mio_libero <pin...@li...> - 2011-10-31 11:01:46
|
Robert, the problem is just that. I added the javascript into wordpress editor and it adds by default the formatting parameters. I should make a js file and load it on that page. The dots i guess can help to give an idea about repulsions in free rotation Pino Il 30/10/2011 18.22, Robert Hanson ha scritto: > I like the dots. Very good idea. > > Check the JavaScript error console. Somehow your editor threw in <p> > within the JavaScript. Just hand edit it. > > Surely you can't have this: > > > <script language="JavaScript"> > //this callback function interfaces between jmol and the energy graph > function testCallback2(jmolApp,frameNumber){ > j=frameNumber > document.form1.messageboard.value = "Energia = " + energyArray[j] + " kcal/mol"; > document.graph.src=imageArray[j].src > }</p> > <p><span id="more-2812"></span></p> > <p>var imageArray = new Array(); > var image2Array = new Array(); > > > > > > On Sun, Oct 30, 2011 at 11:56 AM, Mio_libero <pin...@li... > <mailto:pin...@li...>> wrote: > > Hi, friends, i am rewriting a page that shows the free rotation > around the c2-c3 bond of butane while the energy value is diplayed > are in messagebox area and grph too is shown below as in this > page <http://pinostriccoli.altervista.org/?p=2812> > This page works locally with Jmol 12.2. from my site it is not > work. I cannot find the error. Can anybody help me? > Pino > > ------------------------------------------------------------------------------ > Get your Android app more play: Bring it to the BlackBerry PlayBook > in minutes. BlackBerry App World™ now supports Android™ Apps > for the BlackBerry® PlayBook™. Discover just how easy and > simple > it is! http://p.sf.net/sfu/android-dev2dev > > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > <mailto:Jmo...@li...> > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > ------------------------------------------------------------------------------ > Get your Android app more play: Bring it to the BlackBerry PlayBook > in minutes. BlackBerry App World™ now supports Android™ Apps > for the BlackBerry® PlayBook™. Discover just how easy and simple > it is! http://p.sf.net/sfu/android-dev2dev > > > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users |
From: Mio_libero <pin...@li...> - 2011-10-31 12:17:47
|
Bob, from what i read Wordpress gives headaches when using Js in post. Anyway i created a js file and it is loaded when the post is displayed. The problem is how to make it work. When the molecule is loaded, it should appear on the box the value of energy and a graph. Then at each rotation the value and graph change. At moment, it seems the javascript doesnt work because i dont know how to call the function. Can i insert in document.jmol.script (testCallback2())) ? Il 30/10/2011 18.22, Robert Hanson ha scritto: > I like the dots. Very good idea. > > Check the JavaScript error console. Somehow your editor threw in <p> > within the JavaScript. Just hand edit it. > > Surely you can't have this: > > > <script language="JavaScript"> > //this callback function interfaces between jmol and the energy graph > function testCallback2(jmolApp,frameNumber){ > j=frameNumber > document.form1.messageboard.value = "Energia = " + energyArray[j] + " kcal/mol"; > document.graph.src=imageArray[j].src > }</p> > <p><span id="more-2812"></span></p> > <p>var imageArray = new Array(); > var image2Array = new Array(); > > > > > > On Sun, Oct 30, 2011 at 11:56 AM, Mio_libero <pin...@li... > <mailto:pin...@li...>> wrote: > > Hi, friends, i am rewriting a page that shows the free rotation > around the c2-c3 bond of butane while the energy value is diplayed > are in messagebox area and grph too is shown below as in this > page <http://pinostriccoli.altervista.org/?p=2812> > This page works locally with Jmol 12.2. from my site it is not > work. I cannot find the error. Can anybody help me? > Pino > > ------------------------------------------------------------------------------ > Get your Android app more play: Bring it to the BlackBerry PlayBook > in minutes. BlackBerry App World™ now supports Android™ Apps > for the BlackBerry® PlayBook™. Discover just how easy and > simple > it is! http://p.sf.net/sfu/android-dev2dev > > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > <mailto:Jmo...@li...> > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > ------------------------------------------------------------------------------ > Get your Android app more play: Bring it to the BlackBerry PlayBook > in minutes. BlackBerry App World™ now supports Android™ Apps > for the BlackBerry® PlayBook™. Discover just how easy and simple > it is! http://p.sf.net/sfu/android-dev2dev > > > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users |
From: Jeff H. <jh...@de...> - 2011-10-30 17:51:27
|
I'm not sure where your problem is, but look here for a solution to this. Perhaps it will help you with yours. Bob Hanson also has a nice solution. http://web.me.com/jhansen4/iWeb/Jmol/svgGraphTest5.xhtml *********************************************** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jh...@de... *********************************************** On Oct 30, 2011, at 12:56 PM, Mio_libero wrote: > Hi, friends, i am rewriting a page that shows the free rotation around the c2-c3 bond of butane while the energy value is diplayed are in messagebox area and grph too is shown below as in this page > This page works locally with Jmol 12.2. from my site it is not work. I cannot find the error. Can anybody help me? > Pino > ------------------------------------------------------------------------------ > Get your Android app more play: Bring it to the BlackBerry PlayBook > in minutes. BlackBerry App World™ now supports Android™ Apps > for the BlackBerry® PlayBook™. Discover just how easy and simple > it is! http://p.sf.net/sfu/android-dev2dev > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users |
From: Mio_libero <pin...@li...> - 2011-10-31 11:04:46
|
Thanks Jeff. I will consider that option too. But i guess i found the solution on that page. By the way on firefox on winxp, the page looks really messed up. Pino Il 30/10/2011 18.25, Jeff Hansen ha scritto: > I'm not sure where your problem is, but look here for a solution to > this. Perhaps it will help you with yours. Bob Hanson also has a > nice solution. > > http://web.me.com/jhansen4/iWeb/Jmol/svgGraphTest5.xhtml > > > > *********************************************** > Jeff Hansen > Department of Chemistry and Biochemistry > DePauw University > 602 S. College Ave. > Greencastle, IN 46135 > jh...@de... <mailto:jh...@de...> > *********************************************** > > > On Oct 30, 2011, at 12:56 PM, Mio_libero wrote: > >> Hi, friends, i am rewriting a page that shows the free rotation >> around the c2-c3 bond of butane while the energy value is diplayed >> are in messagebox area and grph too is shown below as in this page >> <http://pinostriccoli.altervista.org/?p=2812> >> This page works locally with Jmol 12.2. from my site it is not work. >> I cannot find the error. Can anybody help me? >> Pino >> ------------------------------------------------------------------------------ >> Get your Android app more play: Bring it to the BlackBerry PlayBook >> in minutes. BlackBerry App World™ now supports Android™ Apps >> for the BlackBerry® PlayBook™. Discover just how easy and >> simple >> it is! http://p.sf.net/sfu/android-dev2dev >> _______________________________________________ >> Jmol-users mailing list >> Jmo...@li... >> <mailto:Jmo...@li...> >> https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > ------------------------------------------------------------------------------ > Get your Android app more play: Bring it to the BlackBerry PlayBook > in minutes. BlackBerry App World™ now supports Android™ Apps > for the BlackBerry® PlayBook™. Discover just how easy and simple > it is! http://p.sf.net/sfu/android-dev2dev > > > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users |
From: A. H. <ang...@ua...> - 2011-09-09 17:27:14
|
Hi Alex I've had a look at the source code and this is what the "select by rectangle area" toolbar button is doing: set modelkitmode off;select none;selectionHalos on;set pickingstyle drag;set picking select atom You are probably fine with just the "set pickingstyle drag" part |