From: Angel H. <ang...@ua...> - 2023-05-19 08:23:57
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Hello, Sinchul Unfortunately, the administrative interface of the email lists does not allow us to see the list of email addresses of members. Are you sure you signed up for the developers list in addition to the users list? They are independent. On the other hand, there is a separate interface for bug reports, under "Tickets" https://sourceforge.net/p/jmol/bugs/ Regarding your problem, I cannot offer you advice, I am not familiar with that format but some else may do. It will always be helpful to share your file where you see the problem. Regards, ________________________________ De: Sinchul Yeom <ta...@gm...> Enviado: viernes, 19 de mayo de 2023 8:42 Para: jmo...@li... <jmo...@li...> Asunto: Re: load fill bug (v >= 14.32?) Hi, I'd like to report this bug and I'm in the user list. Thanks! Sinchul On Fri, May 19, 2023 at 2:35 AM <jmo...@li...<mailto:jmo...@li...>> wrote: You are not allowed to post to this mailing list, and your message has been automatically rejected. You will be able to post if you sign up as a user of the list. If you think that your messages are being rejected in error, contact the mailing list owner at jmo...@li...<mailto:jmo...@li...> ---------- Forwarded message ---------- From: Sinchul Yeom <ta...@gm...<mailto:ta...@gm...>> To: jmo...@li...<mailto:jmo...@li...> Cc: Bcc: Date: Fri, 19 May 2023 02:34:47 -0400 Subject: load fill bug (v >= 14.32?) Hi, I'm a big fan of jmol script. I admire the Jmol script's very systematic design and flexibility and extensibility!! Anyway, I would like to report load fill bugs. * I found loading a certain aims geometry file with fill command fails with the following error: Script ERROR: No atoms found for file /home/taegul/.bin/jmol-16.1.9/geometry_4.in<http://geometry_4.in/> type Aims ---- load "geometry_4.in<http://geometry_4.in/>" fill [ { 0 0 0 } { 20 20 20 } <<<<] $ Considering the lattice parameter is 4.45, 20 is enough length to include atoms. * Also, if some of the atoms are outside of the unit cell, several atoms don't appear when loaded with the fill command. It looks like this started happening since version 14.32.xx. I found 14.31.36 doesn't have this problem, but 14.32.83, 16.1.9, and 16.1.11 have this bug. This is my geometry file and I also attach it. Thank you, Sinchul geometry_4.in<http://geometry_4.in/> ============================================ lattice_vector 4.4530751600000000 -0.0000000000000000 -0.0000000000000000 lattice_vector -0.0000000000000000 4.4530793900000001 0.0000000000000000 lattice_vector -0.0000000000000000 -0.0000000000000000 4.4530793900000001 atom_frac 0.9999856499999999 0.9999968500000002 0.9999966400000001 Sc atom_frac 0.9999855000000001 0.5000029300000000 0.5000035800000000 Sc atom_frac 0.5000142900000000 0.9999965799999999 0.5000034300000000 Sc atom_frac 0.5000145499999999 0.5000036400000000 0.9999963500000002 Sc ============================================ |
From: Robert H. <ha...@st...> - 2023-05-19 10:18:22
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Please send the file to ha...@st... On Fri, May 19, 2023, 3:24 AM Angel Herraez <ang...@ua...> wrote: > Hello, Sinchul > > Unfortunately, the administrative interface of the email lists does not > allow us to see the list of email addresses of members. > Are you sure you signed up for the developers list in addition to the > users list? They are independent. > On the other hand, there is a separate interface for bug reports, under > "Tickets" > https://sourceforge.net/p/jmol/bugs/ > > Regarding your problem, I cannot offer you advice, I am not familiar with > that format but some else may do. > It will always be helpful to share your file where you see the problem. > > Regards, > > ------------------------------ > *De:* Sinchul Yeom <ta...@gm...> > *Enviado:* viernes, 19 de mayo de 2023 8:42 > *Para:* jmo...@li... < > jmo...@li...> > *Asunto:* Re: load fill bug (v >= 14.32?) > > Hi, > > I'd like to report this bug and I'm in the user list. > > Thanks! > Sinchul > > On Fri, May 19, 2023 at 2:35 AM < > jmo...@li...> wrote: > > You are not allowed to post to this mailing list, and your message has > been automatically rejected. You will be able to post if you sign up > as a user of the list. If you think that your messages are being > rejected in error, contact the mailing list owner at > jmo...@li... > > > > > ---------- Forwarded message ---------- > From: Sinchul Yeom <ta...@gm...> > To: jmo...@li... > Cc: > Bcc: > Date: Fri, 19 May 2023 02:34:47 -0400 > Subject: load fill bug (v >= 14.32?) > Hi, > > I'm a big fan of jmol script. I admire the Jmol script's very systematic > design and flexibility and extensibility!! Anyway, I would like to report > load fill bugs. > > ** I found loading a certain aims geometry file with fill command fails > with the following error:* > Script ERROR: No atoms found > for file /home/taegul/.bin/jmol-16.1.9/geometry_4.in > type Aims > ---- > load "geometry_4.in" fill [ { 0 0 0 } { 20 20 20 } <<<<] > $ > Considering the lattice parameter is 4.45, 20 is enough length to include > atoms. > > * *Also, if some of the atoms are outside of the unit cell, several atoms > don't appear when loaded with the fill command. * > > It looks like this started happening since version 14.32.xx. I found > 14.31.36 doesn't have this problem, but 14.32.83, 16.1.9, and 16.1.11 have > this bug. > > This is my geometry file and I also attach it. > Thank you, > Sinchul > > geometry_4.in > ============================================ > lattice_vector 4.4530751600000000 -0.0000000000000000 -0.0000000000000000 > lattice_vector -0.0000000000000000 4.4530793900000001 0.0000000000000000 > lattice_vector -0.0000000000000000 -0.0000000000000000 4.4530793900000001 > atom_frac 0.9999856499999999 0.9999968500000002 0.9999966400000001 Sc > atom_frac 0.9999855000000001 0.5000029300000000 0.5000035800000000 Sc > atom_frac 0.5000142900000000 0.9999965799999999 0.5000034300000000 Sc > atom_frac 0.5000145499999999 0.5000036400000000 0.9999963500000002 Sc > ============================================ > > _______________________________________________ > Jmol-developers mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-developers > |