From: Evans, M. J. <ev...@il...> - 2012-09-05 12:47:12
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Rabia, "Highlight" is a very vague word…there are a few different things you can do. Generically speaking, you need to "select" the atoms you want to do something with, then style them. This is a very common workflow in Jmol. For starters, try playing around with the "show structure" command. Right-click in the applet and select "Console," then type "show structure." That command gives you a list of secondary structural elements, which you can select individually using "select strucno = #" (replace "#" with a number). You can select by atom using select atomno, or by residue using select resno. To style, a wide variety of commands are available. To start simple, after selecting try "color green." All Jmol scripting commands can be executed programmatically in Javascript using the jmolScript function (this may be slighly out of date; I'm not up to speed on JS object developments in Jmol). Cheers, Mike On Sep 5, 2012, at 2:01 AM, MUHAMMAD HASEEB <ee0...@li...<mailto:ee0...@li...>> wrote: IM A RESEARCHER AT QUAID-E-AZAM UNIVERSITY AND AM CREATING A TOOL FOR ANNOTATION AND SUPERPOSITION OF MOTIFS, I WANT TO HIGHLIGHT A SPECIFIC MOTIF IN THE STRUCTURE OF IT PROTEIN, IM USING THE JMOL APPLET NEED HELP UNABLE TO PERFORM THE HIGHLIGHTING PLEASE HELP REGARDS RABIA HASEEB ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats.http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/_______________________________________________ Jmol-developers mailing list Jmo...@li...<mailto:Jmo...@li...> https://lists.sourceforge.net/lists/listinfo/jmol-developers |