From: Mhairi M. <m.m...@im...> - 2010-01-20 04:44:43
|
Hi, I am using Jmol 11.8.17 and having problems with jmolAppletInline trying to get it to read the script. What I want it to do is switch off the wire and just display the protein cartoon group colours and the molecule to spin around. First of all I can't get any changes in the molecule without putting in the delay & spin. Second, the delay only works with 'delay 2', if I change it to 'delay 1' then it just freezes. This command works but it has the wireframe for 2 seconds and then displays the cartoons and spins. I want it to display the cartoon from the start and then spin. jmolAppletInline(650, initPDB, "delay 2;spin on;select all;cpk off;ribbons off;wireframe off;cartoons;select protein;color cartoon group;"); Thanks Mhairi Marshall |
From: Angel H. <ang...@ua...> - 2010-01-20 08:22:18
|
Hello Mhairi > Second, the delay only works with `delay 2´, if I change it to `delay 1´ then it just freezes. That's strange and shouldn't happen, but try "delay 1.0". Or try a different version of Jmol, to find out if it is a bug. > This command works but it has the wireframe for 2 seconds and then displays the cartoons and > spins. I want it to display the cartoon from the start and then spin. I'm not sure, but some times forcing Jmol to redraw at the precise point helps: jmolAppletInline(650, initPDB, "wireframe off;cpk off;ribbons off; cartoons on; refresh; spin on;"); Also, try the same with a saved model and jmolApplet() to see if it's a specific problem with inline. |
From: Robert H. <ha...@st...> - 2010-01-25 02:48:28
|
Please send the offending file to ha...@st... On Tue, Jan 19, 2010 at 10:25 PM, Mhairi Marshall <m.m...@im...>wrote: > Hi, > > > > I am using Jmol 11.8.17 and having problems with jmolAppletInline trying to > get it to read the script. > > > > What I want it to do is switch off the wire and just display the protein > cartoon group colours and the molecule to spin around. > > > > First of all I can’t get any changes in the molecule without putting in the > delay & spin. > > Second, the delay only works with ‘delay 2’, if I change it to ‘delay 1’ > then it just freezes. > > > > This command works but it has the wireframe for 2 seconds and then displays > the cartoons and spins. I want it to display the cartoon from the start and > then spin. > > > > jmolAppletInline(650, initPDB, "delay 2;spin on;select all;cpk off;ribbons > off;wireframe off;cartoons;select protein;color cartoon group;"); > > > > Thanks > > > > Mhairi Marshall > > > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts the > world's best and brightest in the field, creating opportunities for > Conference > attendees to learn about information security's most important issues > through > interactions with peers, luminaries and emerging and established companies. > http://p.sf.net/sfu/rsaconf-dev2dev > _______________________________________________ > Jmol-developers mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-developers > > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |