> In Eval.java there is
> set radius (decimal number)
> and I thought before this was
> set solvent (decimal number)
> But I can't get either of those to work. How does one set the solvent
> radius for DOTS?
Well, it is not easy ... it is a combination of the two.
You change the radius using
set radius <decimal-number>
But, you have to turn on the solvent using
set solvent on
dots on; =23 vdw dots
set solvent on; dots off; dots on; =23 default solvent radius
set radius 3.0; =23 bigger radius
dots off; dots on; =23 must turn off and on in order to force recalc
set radius 0.5; dots off; dots on; =23 smaller radius
The combination of 'solvent' and 'radius' was driven by rasmol
compatibility. However, at this point it deserves a second look.
If/when I get solvent-accessible surfaces working I may fold the dots
support into that, changing the 'dots' commands as I do so.
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