From: <ni...@us...> - 2010-03-14 21:43:24
|
Revision: 12626 http://jmol.svn.sourceforge.net/jmol/?rev=12626&view=rev Author: nicove Date: 2010-03-14 21:43:10 +0000 (Sun, 14 Mar 2010) Log Message: ----------- Version Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-03-14 21:29:58 UTC (rev 12625) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-03-14 21:43:10 UTC (rev 12626) @@ -2,12 +2,17 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.21 +version=11.8.22_dev +# ----------------------------------------------------------------------------- + +#version=11.8.21 + # bug fix: black shades lost in writing (antialiased) images # bug fix: using --i instead of i-- with for causes infinite loop # bug fix: draw FIXED arc, curve, arrow -- no reason not to do this, I think. # bug fix: spacegroup 177 must not have Hall symbol P 63 same as H-M symbol P 63 + # ----------------------------------------------------------------------------- #version=11.8.20 This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ha...@us...> - 2010-03-25 18:30:55
|
Revision: 12700 http://jmol.svn.sourceforge.net/jmol/?rev=12700&view=rev Author: hansonr Date: 2010-03-25 18:30:49 +0000 (Thu, 25 Mar 2010) Log Message: ----------- version=11.8.22 VERSION # bug fix: Spartan and WebMO orbitals are already normalized! # bug fix: MOReader (NBO section) errors reading certain NBO files. # bug fix: spacegroup creation bug with LOAD command SPACEGROUP option Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-03-25 18:30:17 UTC (rev 12699) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-03-25 18:30:49 UTC (rev 12700) @@ -2,7 +2,7 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.22_dev +version=11.8.22 # bug fix: Spartan and WebMO orbitals are already normalized! # bug fix: MOReader (NBO section) errors reading certain NBO files. This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ni...@us...> - 2010-03-25 19:22:03
|
Revision: 12702 http://jmol.svn.sourceforge.net/jmol/?rev=12702&view=rev Author: nicove Date: 2010-03-25 19:21:56 +0000 (Thu, 25 Mar 2010) Log Message: ----------- Version Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-03-25 19:01:48 UTC (rev 12701) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-03-25 19:21:56 UTC (rev 12702) @@ -2,11 +2,16 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.22 +version=11.8.23_dev +# ----------------------------------------------------------------------------- + +#version=11.8.22 + # bug fix: Spartan and WebMO orbitals are already normalized! # bug fix: MOReader (NBO section) errors reading certain NBO files. # bug fix: spacegroup creation bug with LOAD command SPACEGROUP option + # ----------------------------------------------------------------------------- #version=11.8.21 This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ha...@us...> - 2010-03-27 17:23:30
|
Revision: 12716 http://jmol.svn.sourceforge.net/jmol/?rev=12716&view=rev Author: hansonr Date: 2010-03-27 17:23:23 +0000 (Sat, 27 Mar 2010) Log Message: ----------- version=11.8.23_dev # bug fix: load @x does not preserve load options Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-03-27 17:22:40 UTC (rev 12715) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-03-27 17:23:23 UTC (rev 12716) @@ -4,7 +4,7 @@ version=11.8.23_dev -# bug fix: load @x does not preserve load options +# bug fix: load "@x" does not preserve load options # bug fix: load "@x" loads model twice when the saved state is restored # bug fix: UnitCell in appended model but not first model does not display This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ha...@us...> - 2010-04-24 17:41:37
|
Revision: 12916 http://jmol.svn.sourceforge.net/jmol/?rev=12916&view=rev Author: hansonr Date: 2010-04-24 17:41:31 +0000 (Sat, 24 Apr 2010) Log Message: ----------- VERSION version=11.8.23 # bug fix: polyhedra collapsed incorrect shading calculation # bug fix: unicode characters in filenames # bug fix: UFF carbonyl out-of-plane calculation coding error does not minimize carbonyl groups correctly # bug fix: resolver could consider some CUBE files to be MOL files # bug fix: subtle cartoonRenderer error involving --i > 0; # bug fix: rockets miscalculation of sheet parameters since forever (load 1ag6.pdb;rockets on) # bug fix: atomSite incorrectly assigned in AtomSetCollection # bug fix: color hbonds ENERGY causes NPE when non-calculated HBonds are created # bug fix: simple model appended to model having unit cell does not show axes # bug fix: load "@x" does not preserve load options # bug fix: load "@x" loads model twice when the saved state is restored # bug fix: UnitCell in appended model but not first model does not display Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-04-24 17:41:09 UTC (rev 12915) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-04-24 17:41:31 UTC (rev 12916) @@ -2,7 +2,7 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.23 +version=11.8.23 # bug fix: polyhedra collapsed incorrect shading calculation # bug fix: unicode characters in filenames This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ni...@us...> - 2010-04-24 18:31:39
|
Revision: 12919 http://jmol.svn.sourceforge.net/jmol/?rev=12919&view=rev Author: nicove Date: 2010-04-24 18:31:33 +0000 (Sat, 24 Apr 2010) Log Message: ----------- Version Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-04-24 18:28:03 UTC (rev 12918) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-04-24 18:31:33 UTC (rev 12919) @@ -2,8 +2,12 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.23 +version=11.8.24_dev +# ----------------------------------------------------------------------------- + +#version=11.8.23 + # bug fix: polyhedra collapsed incorrect shading calculation # bug fix: unicode characters in filenames # bug fix: UFF carbonyl out-of-plane calculation coding error does not minimize carbonyl groups correctly This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ha...@us...> - 2010-05-10 21:25:05
|
Revision: 13059 http://jmol.svn.sourceforge.net/jmol/?rev=13059&view=rev Author: hansonr Date: 2010-05-10 21:24:59 +0000 (Mon, 10 May 2010) Log Message: ----------- version=11.8.24 VERSION # bug fix: atom.bonds may be null # bug fix: minimizer may not recognize bonds for "new" atoms # code: SMILES minor changes # note: SMILES in 11.8 does not support aromatic lower case "x" # bug fix: SMILES parser not properly checking explicit double bond check # bug fix: Spartan reader (compound document) misread # bug fix: fix for write POVRAY "xxx" not writing file for signed applet # bug fix: CSF reader upgrade # bug fix: writing MOL files with aromatic bonds fails # bug fix: It is possible for PDB files (1tmv) to include non-crystallographic # symmetry operations. These operations do not fit the standard model of # Jones-Faithful operator syntax. (The symmetry in this case is a spiral) # In that case, the list of symmetry operations may be truncated, and though # all the atoms are in the correct positions, "select symop=49" might not work. # bug fix: PDB biomolecule reading misses a set if the first is not "x,y,z" # bug fix: carbohydrate backbone atoms not clickable Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-05-10 21:23:56 UTC (rev 13058) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-05-10 21:24:59 UTC (rev 13059) @@ -2,7 +2,7 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.24_dev +version=11.8.24 # bug fix: atom.bonds may be null # bug fix: minimizer may not recognize bonds for "new" atoms This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ni...@us...> - 2010-05-17 19:40:36
|
Revision: 13117 http://jmol.svn.sourceforge.net/jmol/?rev=13117&view=rev Author: nicove Date: 2010-05-17 19:40:30 +0000 (Mon, 17 May 2010) Log Message: ----------- Version Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-05-17 19:32:37 UTC (rev 13116) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-05-17 19:40:30 UTC (rev 13117) @@ -2,8 +2,12 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.24 +version=11.8.25_dev +# ----------------------------------------------------------------------------- + +#version=11.8.24 + # bug fix: load FILTER not saved in state when not involving a lattice # bug fix: "axesScale" saved in state as "axisScale" # bug fix: atom.bonds may be null This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ha...@us...> - 2010-07-06 22:45:55
|
Revision: 13513 http://jmol.svn.sourceforge.net/jmol/?rev=13513&view=rev Author: hansonr Date: 2010-07-06 22:45:49 +0000 (Tue, 06 Jul 2010) Log Message: ----------- version=11.8.25_dev # bug fix: quaternion frames not properly deleted Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-07-06 22:45:11 UTC (rev 13512) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-07-06 22:45:49 UTC (rev 13513) @@ -4,6 +4,7 @@ version=11.8.25_dev +# bug fix: quaternion frames not properly deleted # bug fix: rocketBarrels not fully smooth barrels. # bug fix: isosurface selecting 2nd model while two are displayed produces no surface # bug fix: draw xx* delete -- does not recognize xx* as wild This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ni...@us...> - 2010-07-10 08:27:41
|
Revision: 13539 http://jmol.svn.sourceforge.net/jmol/?rev=13539&view=rev Author: nicove Date: 2010-07-10 08:27:35 +0000 (Sat, 10 Jul 2010) Log Message: ----------- Version Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-07-10 08:27:10 UTC (rev 13538) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-07-10 08:27:35 UTC (rev 13539) @@ -2,14 +2,19 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.25 +version=11.8.26_dev +# ----------------------------------------------------------------------------- + +#version=11.8.25 + # bug fix: write("COORDS","PDB") doesn't recognize upper case token COORDS # bug fix: quaternion frames not properly deleted # bug fix: rocketBarrels not fully smooth barrels. # bug fix: isosurface selecting 2nd model while two are displayed produces no surface # bug fix: draw xx* delete -- does not recognize xx* as wild # bug fix: dragSelected could be off by 1 pixel + # ----------------------------------------------------------------------------- #version=11.8.24 This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ha...@us...> - 2010-07-28 17:58:33
|
Revision: 13720 http://jmol.svn.sourceforge.net/jmol/?rev=13720&view=rev Author: hansonr Date: 2010-07-28 17:58:26 +0000 (Wed, 28 Jul 2010) Log Message: ----------- last update of 11.8 version=11.8.26 # bug fix: SELECT logic error with ! in front of a chain specification # such as * and ! 56:B%1. This was tranlating to # * and ! 56 and :B and %1 # but then ! has higher precidence then and, so # this was "* and (! 56) and :B and %1" instead of # "* and ! (56 and :B and %1)" # solution is to add a very high-precidence AND # that trumps NOT. Discovered by Paul Pillot. # bug fix: x = {*:} causes error # bug fix: write PDB not correctly justifying atom names # bug fix: %5.-5i overflow off by one digit in precision # bug fix: loading using append with appendNew false may not make bonds Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-07-28 16:25:09 UTC (rev 13719) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-07-28 17:58:26 UTC (rev 13720) @@ -2,14 +2,14 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.26_dev +version=11.8.26 # bug fix: SELECT logic error with ! in front of a chain specification # such as * and ! 56:B%1. This was tranlating to # * and ! 56 and :B and %1 # but then ! has higher precidence then and, so # this was "* and (! 56) and :B and %1" instead of -# "* and ! (56 and :B and %1" +# "* and ! (56 and :B and %1)" # solution is to add a very high-precidence AND # that trumps NOT. Discovered by Paul Pillot. This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ni...@us...> - 2010-07-30 18:21:46
|
Revision: 13761 http://jmol.svn.sourceforge.net/jmol/?rev=13761&view=rev Author: nicove Date: 2010-07-30 18:21:39 +0000 (Fri, 30 Jul 2010) Log Message: ----------- Version Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-07-30 18:08:33 UTC (rev 13760) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-07-30 18:21:39 UTC (rev 13761) @@ -2,8 +2,12 @@ # NOTE: Generally only bug fixes should be entered here. # NOTE: New features should be introduced in the trunk version 11.9.x -version=11.8.26 +version=11.8.27_dev +# ----------------------------------------------------------------------------- + +#version=11.8.26 + # bug fix: SELECT logic error with ! in front of a chain specification # such as * and ! 56:B%1. This was tranlating to # * and ! 56 and :B and %1 This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ha...@us...> - 2010-09-06 13:30:38
|
Revision: 14249 http://jmol.svn.sourceforge.net/jmol/?rev=14249&view=rev Author: hansonr Date: 2010-09-06 13:30:29 +0000 (Mon, 06 Sep 2010) Log Message: ----------- # NO CHANGES, PLEASE. # ----------------------------------------------------------------------------- Modified Paths: -------------- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-09-06 01:31:44 UTC (rev 14248) +++ branches/v11_8/Jmol/src/org/jmol/viewer/Jmol.properties 2010-09-06 13:30:29 UTC (rev 14249) @@ -1,12 +1,13 @@ -# NOTE: This is not the development trunk. It is the release branch. -# NOTE: Generally only bug fixes should be entered here. -# NOTE: New features should be introduced in the trunk version 11.9.x +# NOTE: ALL DEVELOPMENT ON 11.8 WAS HALTED July 30, 2010 +# NOTE: NO BUG FIXES BEING DONE HERE. +# NOTE: see 12.0 for the next release. +# NOTE: see 12.1 for continuation of development. -version=11.8.27_dev +version=11.8.26 -# ----------------------------------------------------------------------------- +# RELEASE CONCLUDED; NO CHANGES, PLEASE. -#version=11.8.26 +# ------------------------------------------------------------------------- # bug fix: SELECT logic error with ! in front of a chain specification # such as * and ! 56:B%1. This was tranlating to This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |