This is done. Jmol 11.7.6 will display all mol2 atom types as found in the file and map correctly (so I claim!) atom types to element symbols for the following force fields:

AMBER, GAFF, ESFF, CFF91, CHARMM, COMPASS, CVFF, CVFF_aug, PCFF

as described in

http://www.chem.cmu.edu/courses/09-560/docs/msi/ffbsim/B_AtomTypes.html

Any more you want, just let me know.


Bob


On Thu, Oct 30, 2008 at 8:17 AM, Angel Herraez <angel.herraez@uah.es> wrote:
El 30 Oct 2008 a las 13:44, FyD escribió:
> Why not simply taking the column of the FF atom types available in the
> Tripos mol2 file format & display it "as it is" ?

I think it's not a question of just "displaying" them, because they
must be converted (mapped) to element names, or you'll get the pink
color problem.



-------------------------------------------------------------------------
This SF.Net email is sponsored by the Moblin Your Move Developer's challenge
Build the coolest Linux based applications with Moblin SDK & win great prizes
Grand prize is a trip for two to an Open Source event anywhere in the world
http://moblin-contest.org/redirect.php?banner_id=100&url=/
_______________________________________________
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users



--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900