#313 incorrect bonds

closed
Miguel
5
2005-09-06
2005-06-15
dcaffrey
No

If you load pdb 1A5Z in to Jmol, the number of bonds
between cadmium and ASP 168 is incorrect.

Discussion

  • Miguel

    Miguel - 2005-06-16

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    user_id=1050060

    If bond connectivity is in the file then Jmol respects what
    is in the file.

    If no bond information is in the file then Jmol will apply a
    general bonding algorithm.

    Bonds constructed by Jmol are always single bonds.

    PDB files rarely specify connectivity between atoms using
    CONECT records.

    For PDB files in particular it would be very difficult to
    calculate bonding because there generally are no hydrogen
    atoms.

     
  • Miguel

    Miguel - 2005-07-28

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    user_id=1050060

    Can this bug be closed?

     
  • Miguel

    Miguel - 2005-09-06
    • status: open --> closed
     

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