Note that if the plug-in dependencies change for any of the patched plug-ins, then a new build-custom.xml will need to be regenerated by:
MANIFEST.MF file and select "PDE Tools" >> "Create Ant Build File". build.xml which will need to be customized like the current build-custom.xml for that plug-in. jmleclipse-utils/bin/jml-runtime.jardesc. You might have to right-click and select the JAR Export Wizard. jmleclipse-utils/lib/jml-runtime.jar.