#3 unknown tag data name BcRn

[Robin van Schendel]

I have been using Jillion for a long time now to open ABI files through Java. Today we received new .ab1 files from our sequence facility and all of a sudden I get this:

java.lang.IllegalArgumentException: unknown tag data name BcRn
at org.jcvi.jillion.trace.chromat.abi.tag.TaggedDataName.parseTaggedDataName(TaggedDataName.java:321)
at org.jcvi.jillion.trace.chromat.abi.AbiChromatogramParser.parseTaggedDataRecords(AbiChromatogramParser.java:637)
at org.jcvi.jillion.trace.chromat.abi.AbiChromatogramParser.parse(AbiChromatogramParser.java:170)
at org.jcvi.jillion.trace.chromat.abi.AbiChromatogramParser.access$1500(AbiChromatogramParser.java:75)
at org.jcvi.jillion.trace.chromat.abi.AbiChromatogramParser$InputStreamChromatogramParser.accept(AbiChromatogramParser.java:939)
at org.jcvi.jillion.trace.chromat.abi.AbiChromatogramBuilder.<init>(AbiChromatogramBuilder.java:118)
at org.jcvi.jillion.trace.chromat.ChromatogramFactory.createCorrectTypeOfChromatogram(ChromatogramFactory.java:132)
at org.jcvi.jillion.trace.chromat.ChromatogramFactory.create(ChromatogramFactory.java:99)
at org.jcvi.jillion.trace.chromat.ChromatogramFactory.create(ChromatogramFactory.java:77)

while BcRn is a valid tag name according to AB1 specs

[Robin van Schendel]

actually this issue is already solved in master. Could you guys make a new release?

[Dan Katzel]

Hi! Thanks for using Jillion!

Yes we can package up a new release hopefully by year's end. Version 5.3. (5.2 was an internal release)

We've also moved development to github

https://github.com/JCVenterInstitute/Jillion

I will keep this ticket open until the new release and to answer any further questions