Home modified by Dan Katzel

Dan Katzel — Thu, 17 Apr 2014 15:53:56 -0000

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-Welcome to your wiki!
+VIGOR - Viral Genome ORF Reader
+===============================

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+VIGOR (Viral Genome ORF Reader) is a perl application to predict protein sequences encoded in viral genomes.  VIGOR was written for [The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID)](http://gsc.jcvi.org/about.php) at The [J. Craig Venter Institute](http://jcvi.org) is sponsored by the [National Institute of Allergy and Infectious Diseases](http://www.niaid.nih.gov).

-The wiki uses [Markdown](/p/jcvi-vigor/wiki/markdown_syntax/) syntax.

-[[members limit=20]]
-[[download_button]]
+VIGOR determines the protein coding sequences by sequence similarity searching against curated viral protein databases.
+
+Supported Viruses
+-----------------
+VIGOR currently annotates the following viruses:
+
+* Alphaviruses 
+
+* Bunyaviridae 
+
+* Coronavirus (Alpha/Beta/Gamma/Delta/Unclassified Cov)
+
+* Filoviridae (Ebola and Marburg)
+
+* Human Rhinovirus/Enterovirus
+
+* Human Adenovirus (A,B,C,D,E,F,G)
+
+* Human Herpesvirus 5
+
+* Influenza (A, B and C for human, avian, and swine)
+
+* Measles/ Morbillivirus
+
+* Metapneumovirus
+
+* Mumps / Rubulavirus
+
+* Norovirus (I, II, misc, murine)
+
+* Rabies
+
+* Respiratory Syncytial virus (RSV)
+
+* Respirovirus (HPIV-1, HPIV-3, Sendai)
+
+* Rotavirus
+
+* Rubella
+
+* Sapovirus
+
+* Varicellovirus
+
+* Yellow Fever / Japanese encephalitis (JEV)
+
+
+Publications
+------------
+The VIGOR software has been published under the following publications:
+
+1. [VIGOR, an annotation program for small viral
+genomes. Shiliang Wang, Jaideep P. Sundaram, David Spiro, BMC Bioinformatics 2010](http://www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf)
+
++ [VIGOR extended to annotate genomes for
+additional 12 different viruses. Shiliang Wang, Jaideep P. Sundaram and Timothy B. Stockwell, Nucleic Acids Research 2012](http://nar.oxfordjournals.org/content/40/W1/W186.full.pdf+html)

Home modified by Dan Katzel

Dan Katzel — Thu, 17 Apr 2014 14:25:41 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Members:

Dan Katzel (admin)

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Home modified by Dan Katzel

Home modified by Dan Katzel

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