Recent changes to jContigSort

WikiPage jContigSort modified by Dieval Guizelini

Dieval Guizelini — Sat, 03 Dec 2011 13:19:08 -0000

--- v2 
+++ v3 
@@ -3,12 +3,53 @@
 
 introduction
 ------------------
-jContigSort a tool that sorts the contigs based on a genome reference and automatically propose an order for further analysis.
-
+Easy and rapid ordering contigs.
+
+jContigSort can be used to ordering contig base and reference genome. It generates summary statistics of your contigs sequences log files. It is easily configurable and provides a user-friendly interface.
+
+Input and output formats
+------------------
+You can use genome reference data in Fasta or GenBank format as input.
+
+The contigs files can be read and write in multi-fasta format files.
+
+
+Enviroment
+------------------
+ContigSort developed in java plataform, you can use in most operating systems.
+
+For the assembly of bacterial organisms, we observed a memory consumption of about 3Gb RAM.
+
+Java Virtual Machine required
+
+
+Open-source
+------------------
+ContigSort is open-source, you can use, modify and redistribute freely.
+
+BSD license
+
+
+News and Updates
+------------------
+12/2011 - New version (1.3) was published, those versions fix one bug  and one change in format log file.
+        - (bug fixed) Changed the initial positions of the centroids for positioning proportional ordered set, the k-means algorithm.
+
+10/2011 - Release of web version 0.1:New web pages developed and published.
+          jContigSort: the first version is released for download on sourceforge.
+
+
 Project members
 ------------------
-under construction
 [[project_admins]]
+Roberto Tadeu Raittz
+Fabio de Oliveira Pedrosa
+Jeroniza Nunes Marchaukoski
+Juliana Helena Tibães
+Maria Berenice R Steffens
+Emanuel M de Souza
+Vanely de Souza
+
 
 Free download
 ------------------

WikiPage jContigSort modified by Dieval Guizelini

Dieval Guizelini — Mon, 26 Sep 2011 15:05:31 -0000

--- v1 
+++ v2 
@@ -1,5 +1,15 @@
-Welcome to your wiki!
-
-This is the default page, edit it as you see fit. To add a page simply reference it within brackets, e.g.: [SamplePage].
-
-The wiki uses [Markdown](/p/jcontigsort/home/markdown_syntax/) syntax.
+jContigSort
+==================
+
+introduction
+------------------
+jContigSort a tool that sorts the contigs based on a genome reference and automatically propose an order for further analysis.
+
+Project members
+------------------
+under construction
+[[project_admins]]
+
+Free download
+------------------
+[[download_button]]

WikiPage Home modified by Dieval Guizelini

Dieval Guizelini — Mon, 26 Sep 2011 14:15:19 -0000

Welcome to your wiki! This is the default page, edit it as you see fit. To add a page simply reference it within brackets, e.g.: [SamplePage]. The wiki uses [Markdown](/p/jcontigsort/home/markdown_syntax/) syntax.