On Apple keyboard you can use F keys as keys for Expose, sound volume, .... or as classic F keys. In iTerm you need classic F keys, in every other applications you probably prefer otherwise. You can switch this in System Prefs, Keyboard, Use keys F1, F2 as standart function keys or use something like Palua - http://www.molowa.com/palua. Posibility to switch to classic F keys on activating iTerm and switch back on deactivating iTerm window will be nice. Some usefull info is on this page - http://forums.macrumors.com/archive/index.php/t-383969.html
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