Iris Calliope

2-photon scanning software

Brought to you by: heinmatt, kellgeor, lupoleon

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File	Date	Author	Commit
01_DataManagement	3 days ago	kellgeor	[r1974] bugfix to create_submissionArchive.m / GK
02_ExpLog	2026-03-11	dororoma	[r1919] LL - Improved error msg in expid2adataPath for ...
03_Network	2024-03-18	dororoma	[r1183]
04_Calliope	1 day ago	kellgeor	[r1984] two bug fixes. 1.) if analysis through deepd3 i...
05_LoadData	2026-03-31	dororoma	[r1933] Adjust synchro signal.
06_Library	2026-01-13	kellgeor	[r1857] 2 major updates:
07_ViewStack	2026-04-20	dororoma	[r1946] rd: added optional argument of setting stack li...
08_RoiQuest	2 days ago	lupoleon	[r1975] LL - fixed a bug in RoiQuest in moveSelectedRoi...
09_Plugins	2026-03-09	kellgeor	[r1917] deepD3 final pipepline prototype / GK
10_Behavior	2026-01-22	dororoma	[r1870] rd: added possibility for Adata.create to creat...
11_TwoPhoton	2026-06-10	kellgeor	[r1960] removed the one layer case added on 08.09.2026 ...
12_Widefield	1 day ago	dororoma	[r1982] rd: fixed error with the path
13_OII	2026-04-13	kellgeor	[r1942] path name cleanup / GK
20_MetaData	2026-01-06	kellgeor	[r1850] MAJOR:
21_Analysis	1 day ago	dororoma	[r1981] rd: fixed error with the path
22_Plotting	1 day ago	dororoma	[r1983] rd: fixed error with the path
23_Prefs	2024-03-20	kellgeor	[r1198]
24_ProjMeta	2026-07-14	lupoleon	[r1969] SM - Fix: in generate_proj_meta.m estimation of...
98_TestingGround	2026-04-13	kellgeor	[r1944] clean up for pathnames / GK
99_Archive	2026-04-13	kellgeor	[r1944] clean up for pathnames / GK
.svnignore	2024-08-26	lupoleon	[r1361] Added a .svnignore file and changed the propert...
README.md	2025-10-23	dororoma	[r1799] Added README.md to the main repo to share downl...
help.txt	2023-07-24	dororoma	[r1057]
init_path.m	2024-10-24	kellgeor	[r1414]
kalliope.mlapp	2026-04-22	kellgeor	[r1950] added score sheet opening from pyratID function...
startup.m	2026-04-13	kellgeor	[r1942] path name cleanup / GK

Read Me

Calliope

Core code for preprocessing and managing data in the lab.

RoiQuest

Software for semi-automatically defining ROIs in two-photon and widefield recordings.
ROIs can be also detected using CellPose.
Pretrained models for 2P images used in the lab can be found here.

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