Iris Calliope

2-photon scanning software

Brought to you by: heinmatt, kellgeor, lupoleon

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File	Date	Author	Commit
01_DataManagement	2026-01-06	kellgeor	[r1850] MAJOR:
02_ExpLog	2025-09-19	heinmatt	[r1773] updated plotting for legibility - dethdomi
03_Network	2024-03-18	dororoma	[r1183]
04_Calliope	2026-01-13	kellgeor	[r1857] 2 major updates:
05_LoadData	2026-01-13	kellgeor	[r1857] 2 major updates:
06_Library	2026-01-13	kellgeor	[r1857] 2 major updates:
07_ViewStack	2024-10-31	lupoleon	[r1431] just a minor change when using the small_figure...
08_RoiQuest	2025-11-12	heinmatt	[r1811] bugfix for wfSaveRois.m
09_Plugins	2024-06-12	dororoma	[r1288] RoiQuest implementation of cellpose now does no...
10_Behavior	2026-01-06	kellgeor	[r1852] updated adata saving to use adata class - GK
11_TwoPhoton	2026-01-13	kellgeor	[r1857] 2 major updates:
12_Widefield	2026-01-13	kellgeor	[r1857] 2 major updates:
13_OII	2024-03-19	dororoma	[r1186]
20_MetaData	2026-01-06	kellgeor	[r1850] MAJOR:
21_Analysis	2025-12-23	heinmatt	[r1845] HM - renamed the function from 'powerInRange.m'...
22_Plotting	2025-12-30	stroedua	[r1846] Added 4 matplotlib colormaps, related GNU licen...
23_Prefs	2024-03-20	kellgeor	[r1198]
24_ProjMeta	2026-01-12	stroedua	[r1856] schitris: median act was computed twice, instea...
98_TestingGround	2025-12-19	dororoma	[r1833] LL - added nbstrp.m as the new standard functio...
99_Archive	2026-01-13	kellgeor	[r1857] 2 major updates:
.svnignore	2024-08-26	lupoleon	[r1361] Added a .svnignore file and changed the propert...
README.md	2025-10-23	dororoma	[r1799] Added README.md to the main repo to share downl...
help.txt	2023-07-24	dororoma	[r1057]
init_path.m	2024-10-24	kellgeor	[r1414]
kalliope.mlapp	2026-01-13	kellgeor	[r1857] 2 major updates:
startup.m	2024-05-29	kellgeor	[r1276]

Read Me

Calliope

Core code for preprocessing and managing data in the lab.

RoiQuest

Software for semi-automatically defining ROIs in two-photon and widefield recordings.
ROIs can be also detected using CellPose.
Pretrained models for 2P images used in the lab can be found here.