Activity for Iris
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Hugo Ladret committed [r652] on Auxiliary Code
GK_RIG02_WFX.ini: adding the rms.AI_rotary_decoder channel - HL
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Eduard Stroukov committed [r1938] on Calliope
AV: small improvements to display of the similarity info.
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Roman Doronin committed [r1937] on Calliope
LL - solve wrong message in tpi_adata_check.m when projections are missing
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AV: clarified output strings as warnings.
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AV: fixed the file existence check to also accommodate existence of only one of the two channels (525, 610) in recording.
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Read date from json not EEG file.
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Adjust synchro signal.
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heinmatt committed [r651] on Auxiliary Code
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update to optionally scale figure window sizes across the screen dimensions. - heinmatt
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HM: WF_corrmat.m - fixed a bug in the default timepoint selection.
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clean up ini files - heinmatt
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updated rig2 WF setup computer names and variables accordingly - heinmatt
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Leonardo Lupori committed [r647] on Auxiliary Code
renamed rig2 WF computer, updated variables files accordingly - heinmatt
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rd: updated comments
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delete long-obsolete WF pipeline functions (for the 12 ROI pipeline). -heinmatt
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Georg committed [r1928] on Calliope
SpineQuest update in view_stack.m /GK
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LL - removed absolute paths from saveUserPrefs.m and loadUserPrefs.m
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rd: updated comments
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rd: updated comments
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rd: removed unnecessary garbage script
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rd: removed obsolete grouping by mice as we are saving now all provided videos in the same folder, without creating subfolders by mice
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rd: modified structure of the folder where the csv files go (instead of creating a folder with the mouse name now it creates a folder named DLC_points_[model_name] because as we will be putting .csv files to _AnimalData given animal's folder, we don't need to create the folder with the name of that animal there - redundant)
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Spines were being saved in a cell array - this was throwing an error when passing to adata. Now spines are assigned a field of a new struct (spines_data.spines = spines) so that add_variable receives a single scalar structure.
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Fixed permute-related error (permute was creating [X, Y, Z] coordinates but StackAligner was receiving them as [Y, X, Z]. Resulted in black frames in StackAligner because it was looking for spiny regions outside of stack bounds).
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LL - Improved error msg in expid2adataPath for when expID is not in explog
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now with correct content
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heinmatt: renamed 2 color imaging machine; update variables accordingly
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deepD3 final pipepline prototype / GK
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LL - Added expid2rawDataStatus.m to query explog and get the raw data status of expids
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AV: changed the threshold for activity similarity to be slightly lower than 1 to avoid check failures from rounding errors.
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and more raw_data_status cleanup / GK
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finished rawDataStatuts related fixes / GK
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more rawDataStatus related fixes / GK
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more updates related to rawdatastatus / GK
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adapted kalliope and getExpLog.m to use ExpLog instead of .mat file for rawdatastatus
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finished first draft of kalliope integration of deepD3 - gk
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bugfix in hEEG_backup.m - GK
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specified the versions of the dependencies needed for deepd3.
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updated hEEG_backup to work with eye tracking data only
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DeepD3
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Installing deepd3.
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added deepd3 dependencies.
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Anna Vasilevskaya committed [r637] on Auxiliary Code
added property node that writes the stackid to clipboard after recording start... paste with Strg + V when filling ExpLog table
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MS run load_hEyeTracking when only eye tracking data are available
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MS load human eye tracking data.
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rd: added fixed limits of color showing the magnitude of arrows
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rd: added custom color limits
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Takahiro settings
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rd: is needed for WF_imageROIvelocityField to color arrows proportionally to their magnitude
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rd: now the color of the arrows is proportional to their length
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ES: bug fix of not moving ROis in eeg template Fixed issue
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rd: small bug with indexing stacks
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rd: added deleting ROIs if they existed before
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LL - Fixed a bug in wfAddRois.m
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rd: .mat files for plotting values in grid ROIs (whole cortex and cranial window)
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rd: added code making .mat file for plotting grid ROIs (both whole cortex and cranial window)
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Allen structures necessary for creating ROI templates and plotting templates
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rd: removed path to tungsten for the Allen structures, now points to C:/Code
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rd: added possibility to also plot cranial window data (inferred by the number of values provided)
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excluded folders from showing on the list
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rd: fixed the bug with assigning 'FAILED' status to the first ExpID instead of the failed one,
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ES: increased circle sizes in Only_EEG_Electrodes_grid_template.mat
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ES: increased circles for EEG_electrode_positions_based_on_lambda-bregma.mat
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ES: increased circle size for ROItemplate_generate_only_eeg_electrode_positions_lambda_bregma.m
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LL - Adata 1.4.2 - Improved the documentation of add_variable()
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adding a "verbose" optional argument to plotBSTRP.m to monitor function progress - HL
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LL - Adata.m 1.4.1 bugfix in Adata.create()
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rd: added possibility for Adata.create to create a new folder for the mouse if it doesn't exist
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rd: added possibility for Adata.create to create a new folder for the mouse if it doesn't exist
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rd: added possibility for Adata.create to create a new folder for the mouse if it doesn't exist
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LL Adata.m (1.4.0) Adata.create() allows creation of new folders.
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rd: fixed the bug of not providing .mat extension as the path to Adata, and the bug where matlab was trying to create structure array when it saw cell array as the field value - wrapped cell arrays into {}
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Updating a comment field in register_multilayer.m - HL
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Fixed for the case of no lab notes found (when the paths search gives no result), with initializing an empty variable that was otherwise not initialized if no page is found.
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mark point feature added to view_stack - GK
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LL - Better error message in Adata.m
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bugfixes to meta documentation - GK
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updated the way set_lab_paths works (you define which path you want as input argument - no argument returns adata_path) - could have unexpected consequences - GK
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minor bufix GK
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added lab note extract to proj_meta in generate_proj_meta.m - GK
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bugfix for tpi delete pipeline - GK
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