https://sourceforge.net/p/ipig/wiki/GeneControl%2520GUI/Recent changes to GeneControl GUIenThu, 29 Mar 2012 11:20:37 -0000https://sourceforge.net/p/ipig/wiki/GeneControl%2520GUI/<pre>--- v4 +++ v5 @@ -1,5 +1,5 @@ This gives an overview how to run the GeneControl GUI. -For more details about the data formats look at the corresponding wiki page: [Data Formats] +For more details about the data formats look at the corresponding wiki page: [Input Formats]  </pre>Mathias KuhringThu, 29 Mar 2012 11:20:37 -0000https://sourceforge.neteb3058acbb974fae1b0a7eca9b8b3372c5a1f109https://sourceforge.net/p/ipig/wiki/GeneControl%2520GUI/<pre>--- v3 +++ v4 @@ -1,30 +1,30 @@ -This gives you an overview how to run the GeneControl GUI. +This gives an overview how to run the GeneControl GUI. For more details about the data formats look at the corresponding wiki page: [Data Formats]  Resources --------- * **UCSC/Ensembl Genes table file** - * Indicate a file with the reference gene annotations in USCS table format you like to control (UCSC or Ensembl genes are supported yet) + * Indicate a file with the reference gene annotations in USCS table format you like to control (UCSC or Ensembl genes are currently supported) * **UCSC/Ensembl Amino Acid Sequences table file** * Indicate a file with reference amino acid sequences corresponding to the gene annotations file in USCS table format * **Reference chromosomes path** * Indicate the path with the reference chromosome Options --------------- * **Minimal similarity** * Define the desired minimum similarity between reference amino acid sequences and self translated sequences (Please note, comparisons of sequences with different lengths will result in a similarity of zero) Execution --------- * **Start** * Run the control by pressing the Start-button Configuration ------------- * **Load** * Load a configuration file to import the parameters for Resources, Output and Options * **Save** - * Save a configuration file to keep your choosen Resources, Output and Options + * Save a configuration file to keep the selected Resources, Output and Options </pre>Mathias KuhringMon, 19 Mar 2012 13:33:59 -0000https://sourceforge.net1de2160d2ca4041ec075fc79fd5670e4e92d9c83https://sourceforge.net/p/ipig/wiki/GeneControl%2520GUI/<pre></pre>Mathias KuhringSat, 17 Mar 2012 07:56:16 -0000https://sourceforge.net75261d07de3b8a623414dc5f75d509e1cf89ce27https://sourceforge.net/p/ipig/wiki/How%2520to%2520use%2520the%2520GeneControl%2520GUI/<pre>--- v1 +++ v2 @@ -10,20 +10,21 @@ * **UCSC/Ensembl Amino Acid Sequences table file** * Indicate a file with reference amino acid sequences corresponding to the gene annotations file in USCS table format * **Reference chromosomes path** - * ... - + * Indicate the path with the reference chromosome + Options --------------- -* +* **Minimal similarity** + * Define the desired minimum similarity between reference amino acid sequences and self translated sequences (Please note, comparisons of sequences with different lengths will result in a similarity of zero) Execution --------- * **Start** * Run the control by pressing the Start-button Configuration ------------- * **Load** - * Load a configuration file to import the parameters for Resources and Export Settings + * Load a configuration file to import the parameters for Resources, Output and Options * **Save** - * Save a configuration file to keep your choosen Resources and Export Settings + * Save a configuration file to keep your choosen Resources, Output and Options </pre>Mathias KuhringSat, 17 Mar 2012 07:15:07 -0000https://sourceforge.net3ad0627309406eff1b30d56c372ee5f9db7705ebhttps://sourceforge.net/p/ipig/wiki/How%2520to%2520use%2520the%2520GeneControl%2520GUI/This gives you an overview how to run the GeneControl GUI. For more details about the data formats look at the corresponding wiki page: [Data Formats]  Resources --------- * **UCSC/Ensembl Genes table file** * Indicate a file with the reference gene annotations in USCS table format you like to control (UCSC or Ensembl genes are supported yet) * **UCSC/Ensembl Amino Acid Sequences table file** * Indicate a file with reference amino acid sequences corresponding to the gene annotations file in USCS table format * **Reference chromosomes path** * ... Options --------------- * Execution --------- * **Start** * Run the control by pressing the Start-button Configuration ------------- * **Load** * Load a configuration file to import the parameters for Resources and Export Settings * **Save** * Save a configuration file to keep your choosen Resources and Export SettingsMathias KuhringSat, 17 Mar 2012 00:06:39 -0000https://sourceforge.net87d23e718deafe1eea275a19fc8199ec137472ad