invade insertbias

Brought to you by: rokofler

Commit [r9] Maximize Restore History

added simulation of neutral sites

Authored by: rokofler 2019-09-09

Browse code at this revision

Parent: [r8]

Child: [r10]

added	/src/META-INF
added	/src/META-INF/MANIFEST.MF
changed	/src/inv/Main.java
changed	/src/inv/corelib/Population.java
changed	/src/inv/corelib/fitness/FitnessFunction.java
copied	/src/inv/corelib/fitness/FitnessFunction.java -> /src/inv/corelib/fitness/FitnessFunctionNeutralPositions.java
changed	/src/inv/corelib/genome/DiploidGenome.java
changed	/src/inv/corelib/genome/GenomicInterval.java
changed	/src/inv/corelib/genome/HaploidGenome.java
changed	/src/inv/corelib/statistic/SpecimenSummary.java
changed	/src/inv/corelib/statistic/SpecimenSummaryBuilder.java
changed	/src/inv/insbias/InsbiasComandLineParser.java
changed	/src/inv/insbias/SimulateInsbias.java
changed	/src/inv/insbias/resource/IBOutputManager.java
changed	/src/inv/insbias/resource/IBResourceLoader.java
changed	/src/inv/insbias/resource/IBResourceManager.java
changed	/src/inv/insbias/resource/PopulationSummary.java
changed	/src/inv/unittest/UnitTesterMain.java
added	/src/inv/unittest/testcases/Test_FFNeutralPositions.java
changed	/src/inv/unittest/testcases/Test_JumpAndRecombine.java
added	/src/inv/unittest/testcases/Test_TEInsertion.java

/src/META-INF

Directory.

/src/META-INF/MANIFEST.MF Diff Switch to side-by-side view

/src/inv/Main.java Diff Switch to side-by-side view

/src/inv/corelib/Population.java Diff Switch to side-by-side view

/src/inv/corelib/fitness/FitnessFunction.java Diff Switch to side-by-side view

/src/inv/corelib/fitness/FitnessFunction.java to /src/inv/corelib/fitness/FitnessFunctionNeutralPositions.java

File was copied.

/src/inv/corelib/genome/DiploidGenome.java Diff Switch to side-by-side view

/src/inv/corelib/genome/GenomicInterval.java Diff Switch to side-by-side view

/src/inv/corelib/genome/HaploidGenome.java Diff Switch to side-by-side view

/src/inv/corelib/statistic/SpecimenSummary.java Diff Switch to side-by-side view

/src/inv/corelib/statistic/SpecimenSummaryBuilder.java Diff Switch to side-by-side view

/src/inv/insbias/InsbiasComandLineParser.java Diff Switch to side-by-side view

/src/inv/insbias/SimulateInsbias.java Diff Switch to side-by-side view

/src/inv/insbias/resource/IBOutputManager.java Diff Switch to side-by-side view

/src/inv/insbias/resource/IBResourceLoader.java Diff Switch to side-by-side view

/src/inv/insbias/resource/IBResourceManager.java Diff Switch to side-by-side view

/src/inv/insbias/resource/PopulationSummary.java Diff Switch to side-by-side view

/src/inv/unittest/UnitTesterMain.java Diff Switch to side-by-side view

/src/inv/unittest/testcases/Test_FFNeutralPositions.java Diff Switch to side-by-side view

/src/inv/unittest/testcases/Test_JumpAndRecombine.java Diff Switch to side-by-side view

/src/inv/unittest/testcases/Test_TEInsertion.java Diff Switch to side-by-side view