output

• summary.tsv:
• exons.tsv:
• reads.txt:
• breakpoints.tsv:
• bk_fusion.bedpe
• bk_sv.vcf

summary.tsv:

5p and 3p gene names,
whether reciprocal (Y/N),
tier (1-7),
type (inter_chromosomal/intra_chromosomal/read_through), numbers of spanning/encompassing RNA-Seq/WGS reads, and isoforms.


exons.tsv:

For fusions with canonical exonic boundaries,
5p and 3p gene names, transcript ids and exons involved, strand of genes, coordinates and sequences of exons.

reads.txt:

Coordinates and sequences of Encompassing/Spanning RNA-Seq/WGS reads for the fusions.

breakpoints.tsv:

5p and 3p gene names, coordinates of fusion junctions and genomic breakpoints.

bk_fusion.bedpe

Gene fusions in bedpe format

bk_sv.vcf

SVs in vcf format