Tom Smith - 2016-01-19

Is there any reason why INTEGRATE is not detecting inter-chromosomal events for my samples (32 RNA-Seq + Control and Tumour DNA-Seq BAMs) ? I get lots of intra-chromosomal events (+ read-through). I see this exception multiple times. Does this explain my lack of intra-chromosomal events?

Inquire a not existed reference sequence in chrNameToIndex. exception caught: map::at
Inquire a not existed reference sequence in chrNameToIndex. exception caught: map::at
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