annotate ensembl hg38 for integrate 0.2.6

Brought to you by: jin-wash-u

annotate ensembl hg38 for integrate 0.2.6

Created: 2018-03-11

Updated: 2018-03-23

    The test data in sourceforce doesn't work for integrate 0.2.6.  It must have been for previous version.  Anyone has annotate for ensembl hg38 0.2.6 which needs  11 columns instead of 9?  I see on sourceforge we have hg19 annotate file

Jin - 2018-03-23

Hi Arnold,

Please refer to https://github.com/ChrisMaherLab/INTEGRATE-Vis, which contains the detailed commands for generating annotation files, and addtional examples.

As for the test case here, becasue the sample BAM was on hg19/GRCh37, you have to stick to the version of the reference. You can just grep chr6 and 19 using the annotation file with 11 columns here to make the test case work.

Thanks,
Jin

If you would like to refer to this comment somewhere else in this project, copy and paste the following link:

annotate ensembl hg38 for integrate 0.2.6

Forums

Help

annotate ensembl hg38 for integrate 0.2.6

annotate ensembl hg38 for integrate 0.2.6

Forums

Help

annotate ensembl hg38 for integrate 0.2.6 document.SUBSCRIPTION_OPTIONS = { "thing": "topic", "subscribed": false, "url": "subscribe", "icon": { "css": "fa fa-envelope-o" } };

annotate ensembl hg38 for integrate 0.2.6