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Re: [infomap-nlp-users] Problem executing infomap-build : core dumped after initializing wordlist
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From: Scott C. <ced...@gm...> - 2006-11-03 17:55:38
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Hi Tonio,
Well, I'm not at all sure what is causing this. A couple of
things you might want to try:
1. Rebuild the software (configure/make) and try again.
2. Run the command that failed count_wordvec command that
failed (shown below)
within gdb, and do a backtrace to find out where the segmentation
fault happened. Report back.
Sorry I can't be any more helpful... good luck.
Scott
count_wordvec \
-mdir /cygdrive/f/IMmodels//Test2 \
-matlab 0 \
-precontext 100 \
-postcontext 100 \
-rows 80000 \
-columns 2999 \
-col_labels_from_file 0 \
-col_label_file ""
On 11/1/06, Tonio Wandmacher <ton...@un...> wrote:
> Hello,
>
> when running a build on a rather small corpus (14 M words), infomap
> stopped the execution, telling me "Error while dumping state (probably
> corrupted stack)".
> I work under cygwin and I have never had any problems before. I've done
> exactly the same before using much larger corpora, and they ran
> smoothly. Do you have any idea of what has gone wrong?
>
> Thanks !
>
> Tonio
>
> P.S. Here's the shell output:
>
> $ nice infomap-build -w /cygdrive/f/IMmodels/ -p
> /cygdrive/f/IMmodels/params_de1.txt -s /cygdrive/f/IMmodels/taz.wsp TAZ
> Sourcing param file "/cygdrive/f/IMmodels/params_de1.txt"
> Sourcing extra param file "/tmp/infomap-build.kt3160"
> Contents are:
> Removing extra param file
> WORKING_DATA_DIR =3D "/cygdrive/f/IMmodels//Test2"
> CORPUS_DIR =3D "/cygdrive/f/IMmodels"
> CORPUS_FILE =3D "/cygdrive/f/IMmodels/test.wsp"
> FNAMES_FILE =3D ""
> ROWS =3D "80000"
> COLUMNS =3D "2999"
> SINGVALS =3D "150"
> SVD_ITER =3D "450"
> PRE_CONTEXT_SIZE =3D "100"
> POST_CONTEXT_SIZE =3D "100"
> WRITE_MATLAB_FORMAT =3D "0"
> VALID_CHARS_FILE =3D "valid_chars.de"
> STOPLIST_FILE =3D "stopDEucf.txt"
> COL_LABELS_FROM_FILE =3D "0"
> COL_LABEL_FILE =3D ""
> echo "Making datadir"
> Making datadir
> mkdir -p /cygdrive/f/IMmodels//Test2
>
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D
> Building target: /cygdrive/f/IMmodels//Test2/wordlist
> Prerequisites: /cygdrive/f/IMmodels/test.wsp
> Wed Nov 1 15:49:31 WEST 2006
> ..................................................
> prepare_corpus \
> -cdir "/cygdrive/f/IMmodels" \
> -mdir "/cygdrive/f/IMmodels//Test2" \
> -cfile "/cygdrive/f/IMmodels/test.wsp" \
> -fnfile "" \
> -chfile "valid_chars.de" \
> -slfile "stopDEucf.txt" \
> -rptfile ""
> Locale set to (null).
> Opening File for "r":
> "valid_chars.de"
> Opening File for "r":
> ""
> my_fopen: No such file or directory
> Opening File for "r":
> "stopDEucf.txt"
> Opening File for "w":
> "/cygdrive/f/IMmodels//Test2/wordlist"
> Opening File for "r":
> "/cygdrive/f/IMmodels/test.wsp"
> Opening File for "w":
> "/cygdrive/f/IMmodels//Test2/numDocs"
> Typecount =3D 499545
> Preparing to sort ... Sorting ... Done.
> Opening File for "w":
> "/cygdrive/f/IMmodels//Test2/dic"
> ..................................................
> Finishing target: /cygdrive/f/IMmodels//Test2/wordlist
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D
>
>
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D
> Building target: /cygdrive/f/IMmodels//Test2/coll
> Prerequisites: /cygdrive/f/IMmodels//Test2/wordlist
> /cygdrive/f/IMmodels//Test2/dic /cygdrive/f/IMmodels//Test2/numDocs
> Wed Nov 1 15:50:26 WEST 2006
> ..................................................
> count_wordvec \
> -mdir /cygdrive/f/IMmodels//Test2 \
> -matlab 0 \
> -precontext 100 \
> -postcontext 100 \
> -rows 80000 \
> -columns 2999 \
> -col_labels_from_file 0 \
> -col_label_file ""
> model data dir is "/cygdrive/f/IMmodels//Test2".
> count_wordvec.c: looking for 80000 rows
> which had better match 80000
> Reading the dictionary... Opening File for "r":
> "/cygdrive/f/IMmodels//Test2/dic"
> Opening File for "r":
> "/cygdrive/f/IMmodels//Test2/numDocs"
> Initializing row indices...Done.
> Initializing column indices...Done.
> Allocating matrix memory...done.
> Initializing matrix...done.
> model data dir is "/cygdrive/f/IMmodels//Test2".
> count_wordvec.c: about to call process_wordlist
> Entering process_wordlist.
> About to call initialize_wordlist.
> Opening File for "r":
> "/cygdrive/f/IMmodels//Test2/wordlist"
> Returned from initialize_wordlist.
> 264 [main] count_wordvec 3864 _cygtls::handle_exceptions: Error
> while dumping state (probably corrupted stack)
> make: *** [/cygdrive/f/IMmodels//Test2/coll] Segmentation fault (core
> dumped)
>
>
> --
> Tonio Wandmacher
> Wiss. Mitarbeiter
> Institut f=FCr Kognitionswissenschaft
> AG K=FCnstliche Intelligenz
> Universit=E4t Osnabr=FCck
> Albrechtstra=DFe 28
> D-49076 Osnabr=FCck
>
> Raum 31/450c
> Tel +49 (0)541 969-3391
> E-Mail: ton...@un...
>
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