[infomap-nlp-users] InfoMap and Cygwin Compiling Problems

[Robert B. <ha...@be...>]

 Good evening. My name is Robert Batesole and I am working on a senior =
project for the Univ. of Southern Mississippi. I've been working with =
the InfoMap software, attempting to correctly compile and run the =
software under a Cygwin environment, but have encountered difficulties =
when running the 'make' program after './configure'.

 Below is the output produced by both the make and ./configure files. =
Any chance the problem can be identified? Thanks!

-Robert Batesole

OUTPUT OF 'MAKE' AND './CONFIGURE':

Robert@robbiebee /tmp/infomap-nlp-0.8.5

$ ./configure

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking for gcc... gcc

checking for C compiler default output file name... a.exe

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... .exe

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ANSI C... none needed

checking for style of include used by make... GNU

checking dependency style of gcc... gcc3

checking how to run the C preprocessor... gcc -E

checking for a BSD-compatible install... /usr/bin/install -c

checking whether make sets $(MAKE)... (cached) yes

checking for sqrt in -lm... yes

checking for dbm_open in -lgdbm... no

checking for dbm_open in -lgdbm_compat... yes

checking for egrep... grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking fcntl.h usability... yes

checking fcntl.h presence... yes

checking for fcntl.h... yes

checking locale.h usability... yes

checking locale.h presence... yes

checking for locale.h... yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking sys/file.h usability... yes

checking sys/file.h presence... yes

checking for sys/file.h... yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking ndbm.h usability... yes

checking ndbm.h presence... yes

checking for ndbm.h... yes

checking for an ANSI C-conforming const... yes

checking for off_t... yes

checking for size_t... yes

checking for stdlib.h... (cached) yes

checking for GNU libc compatible malloc... yes

checking whether lstat dereferences a symlink specified with a trailing =
slash...

 yes

checking whether stat accepts an empty string... no

checking for getcwd... yes

checking for memset... yes

checking for setlocale... yes

checking for sqrt... yes

checking for strchr... yes

checking for strdup... yes

checking for strstr... yes

checking for dbm_open... yes

checking for dbm_close... yes

checking for dbm_fetch... yes

checking for dbm_store... yes

configure: creating ./config.status

./config.status: line 305: NLP config.status 0.8.5

configured by ./configure, generated by GNU Autoconf 2.59,

  with options ""

=20

Copyright (C) 2003 Free Software Foundation, Inc.

This config.status script is free software; the Free Software Foundation

gives unlimited permission to copy, distribute and modify it.: No such =
file or d

irectory

config.status: creating Makefile

config.status: creating preprocessing/Makefile

config.status: creating search/Makefile

config.status: creating svd/Makefile

config.status: creating svd/svdinterface/Makefile

config.status: creating lib/Makefile

config.status: creating admin/Makefile

config.status: creating admin/infomap-build

config.status: creating admin/infomap-install

config.status: creating admin/Makefile.data

config.status: creating admin/default-params

config.status: creating doc/Makefile

config.status: creating doc/man/Makefile

config.status: creating doc/man/man1/Makefile

config.status: creating doc/man/man5/Makefile

config.status: creating doc/html/Makefile

config.status: creating doc/html/tutorial/Makefile

config.status: creating config.h

config.status: config.h is unchanged

config.status: executing depfiles commands

=20

Robert@robbiebee /tmp/infomap-nlp-0.8.5

$ make

make  all-recursive

make[1]: Entering directory `/tmp/infomap-nlp-0.8.5'

Making all in .

make[2]: Entering directory `/tmp/infomap-nlp-0.8.5'

make[2]: Leaving directory `/tmp/infomap-nlp-0.8.5'

Making all in admin

make[2]: Entering directory `/tmp/infomap-nlp-0.8.5/admin'

make[2]: Nothing to be done for `all'.

make[2]: Leaving directory `/tmp/infomap-nlp-0.8.5/admin'

Making all in lib

make[2]: Entering directory `/tmp/infomap-nlp-0.8.5/lib'

make[2]: Nothing to be done for `all'.

make[2]: Leaving directory `/tmp/infomap-nlp-0.8.5/lib'

Making all in search

make[2]: Entering directory `/tmp/infomap-nlp-0.8.5/search'

make[2]: Nothing to be done for `all'.

make[2]: Leaving directory `/tmp/infomap-nlp-0.8.5/search'

Making all in preprocessing

make[2]: Entering directory `/tmp/infomap-nlp-0.8.5/preprocessing'

make[2]: Nothing to be done for `all'.

make[2]: Leaving directory `/tmp/infomap-nlp-0.8.5/preprocessing'

Making all in svd

make[2]: Entering directory `/tmp/infomap-nlp-0.8.5/svd'

Making all in svdinterface

make[3]: Entering directory `/tmp/infomap-nlp-0.8.5/svd/svdinterface'

if gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I../../lib -I../../admin    -g =
-O2 -MT m

yutils.o -MD -MP -MF ".deps/myutils.Tpo" -c -o myutils.o myutils.c; \

then mv -f ".deps/myutils.Tpo" ".deps/myutils.Po"; else rm -f =
".deps/myutils.Tpo

"; exit 1; fi

myutils.c: In function `mymalloc':

myutils.c:167: error: conflicting types for 'malloc'

make[3]: *** [myutils.o] Error 1

make[3]: Leaving directory `/tmp/infomap-nlp-0.8.5/svd/svdinterface'

make[2]: *** [all-recursive] Error 1

make[2]: Leaving directory `/tmp/infomap-nlp-0.8.5/svd'

make[1]: *** [all-recursive] Error 1

make[1]: Leaving directory `/tmp/infomap-nlp-0.8.5'

make: *** [all] Error 2

=20

Robert@robbiebee /tmp/infomap-nlp-0.8.5