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From: Bertram, A. <ber...@um...> - 2008-11-03 12:15:59
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Amir, I believe this is a known issue for a 64-bit platform. Please see the patch I submitted which I believe to solve this: http://sourceforge.net/tracker/index.php?func=detail&aid=1806303&group_id=99109&atid=623181 I may have explained the details of why this was happening on the email list, but IIRC it has to do with picky compiler defaults for function return values, and the mymalloc function's return value being truncated to 32 bits. HTH, Albert Bertram -----Original Message----- From: Amir Hossein Jadidinejad [mailto:ami...@ya...] Sent: Mon 11/3/2008 4:20 AM To: inf...@li... Subject: [infomap-nlp-users] infomap-build: Error 139 (segmentation fault) Hi,I'm using a latest version of infomap on OpenSuse11 x64. It successfully make and install but following is a error message when running infomap-build command:amir-pc:/ # infomap-build -s /test/kjbible.txt sf Sourcing param file "/usr/local/share/infomap-nlp/default-params" Sourcing extra param file "/tmp/infomap-build.PVwib4" Contents are: Removing extra param file WORKING_DATA_DIR = "/collections/infomap_models/sf" CORPUS_DIR = "/test" CORPUS_FILE = "/test/kjbible.txt" FNAMES_FILE = "" ROWS = "20000" COLUMNS = "1000" SINGVALS = "100" SVD_ITER = "100" PRE_CONTEXT_SIZE = "15" POST_CONTEXT_SIZE = "15" WRITE_MATLAB_FORMAT = "0" VALID_CHARS_FILE = "/usr/local/share/infomap-nlp/valid_chars.en" STOPLIST_FILE = "/usr/local/share/infomap-nlp/stop.list" COL_LABELS_FROM_FILE = "0" COL_LABEL_FILE = "" echo "Making datadir" Making datadir mkdir -p /collections/infomap_models/sf ================================================== Building target: /collections/infomap_models/sf/wordlist Prerequisites: /test/kjbible.txt Mon Nov 3 12:05:43 EST 2008 .................................................. prepare_corpus \ -cdir "/test" \ -mdir "/collections/infomap_models/sf" \ -cfile "/test/kjbible.txt" \ -fnfile "" \ -chfile "/usr/local/share/infomap-nlp/valid_chars.en" \ -slfile "/usr/local/share/infomap-nlp/stop.list" \ -rptfile "" Locale set to en_US. Opening File for "r": "/usr/local/share/infomap-nlp/valid_chars.en" Opening File for "r": "" my_fopen: No such file or directory Opening File for "r": "/usr/local/share/infomap-nlp/stop.list" Opening File for "w": "/collections/infomap_models/sf/wordlist" Opening File for "r": "/test/kjbible.txt" Opening File for "w": "/collections/infomap_models/sf/numDocs" Typecount = 12805 Preparing to sort ... Sorting ... Done. Opening File for "w": "/collections/infomap_models/sf/dic" .................................................. Finishing target: /collections/infomap_models/sf/wordlist ================================================== ================================================== Building target: /collections/infomap_models/sf/coll Prerequisites: /collections/infomap_models/sf/wordlist /collections/infomap_models/sf/dic /collections/infomap_models/sf/numDocs Mon Nov 3 12:05:43 EST 2008 .................................................. count_wordvec \ -mdir /collections/infomap_models/sf \ -matlab 0 \ -precontext 15 \ -postcontext 15 \ -rows 20000 \ -columns 1000 \ -col_labels_from_file 0 \ -col_label_file "" model data dir is "/collections/infomap_models/sf". count_wordvec.c: looking for 12805 rows which had better match 12805 Reading the dictionary... Opening File for "r": "/collections/infomap_models/sf/dic" Opening File for "r": "/collections/infomap_models/sf/numDocs" Initializing row indices...Done. Initializing column indices...Done. Allocating matrix memory...done. Initializing matrix...done. model data dir is "/collections/infomap_models/sf". count_wordvec.c: about to call process_wordlist Entering process_wordlist. About to call initialize_wordlist. Opening File for "r": "/collections/infomap_models/sf/wordlist" Returned from initialize_wordlist. Writing the co-occurrence matrix. Entering write_matrix_svd; rows = 12805 and columns = 1000. Opening File for "w": "/collections/infomap_models/sf/coll" Opening File for "w": "/collections/infomap_models/sf/indx" .................................................. Finishing target: /collections/infomap_models/sf/coll ================================================== ================================================== Building target: /collections/infomap_models/sf/left Prerequisites: /collections/infomap_models/sf/coll /collections/infomap_models/sf/indx Mon Nov 3 12:05:45 EST 2008 .................................................. cd /collections/infomap_models/sf && rm -f svd_diag left \ rght sing cd /collections/infomap_models/sf && svdinterface \ -singvals 100 \ -iter 100 This is svdinterface. Writing to: left Writing to: rght Writing to: sing Writing to: svd_diag Reading: indx Reading: indx Reading: coll /bin/sh: line 2: 8375 Segmentation fault svdinterface -singvals 100 -iter 100 make: *** [/collections/infomap_models/sf/left] Error 139 Thanks in advance. Regard,----------------------------------- Amir Hossein Jadidinejad Master of Computer Science Islamic Azad University, Iran Home Page: http://jadidi.info E-Mail : am...@ja... , ami...@ya... |
|
From: Amir H. J. <ami...@ya...> - 2008-11-03 09:20:34
|
Hi,I'm using a latest version of infomap on OpenSuse11 x64. It successfully make and install but following is a error message when running infomap-build command:amir-pc:/ # infomap-build -s /test/kjbible.txt sf Sourcing param file "/usr/local/share/infomap-nlp/default-params" Sourcing extra param file "/tmp/infomap-build.PVwib4" Contents are: Removing extra param file WORKING_DATA_DIR = "/collections/infomap_models/sf" CORPUS_DIR = "/test" CORPUS_FILE = "/test/kjbible.txt" FNAMES_FILE = "" ROWS = "20000" COLUMNS = "1000" SINGVALS = "100" SVD_ITER = "100" PRE_CONTEXT_SIZE = "15" POST_CONTEXT_SIZE = "15" WRITE_MATLAB_FORMAT = "0" VALID_CHARS_FILE = "/usr/local/share/infomap-nlp/valid_chars.en" STOPLIST_FILE = "/usr/local/share/infomap-nlp/stop.list" COL_LABELS_FROM_FILE = "0" COL_LABEL_FILE = "" echo "Making datadir" Making datadir mkdir -p /collections/infomap_models/sf ================================================== Building target: /collections/infomap_models/sf/wordlist Prerequisites: /test/kjbible.txt Mon Nov 3 12:05:43 EST 2008 .................................................. prepare_corpus \ -cdir "/test" \ -mdir "/collections/infomap_models/sf" \ -cfile "/test/kjbible.txt" \ -fnfile "" \ -chfile "/usr/local/share/infomap-nlp/valid_chars.en" \ -slfile "/usr/local/share/infomap-nlp/stop.list" \ -rptfile "" Locale set to en_US. Opening File for "r": "/usr/local/share/infomap-nlp/valid_chars.en" Opening File for "r": "" my_fopen: No such file or directory Opening File for "r": "/usr/local/share/infomap-nlp/stop.list" Opening File for "w": "/collections/infomap_models/sf/wordlist" Opening File for "r": "/test/kjbible.txt" Opening File for "w": "/collections/infomap_models/sf/numDocs" Typecount = 12805 Preparing to sort ... Sorting ... Done. Opening File for "w": "/collections/infomap_models/sf/dic" .................................................. Finishing target: /collections/infomap_models/sf/wordlist ================================================== ================================================== Building target: /collections/infomap_models/sf/coll Prerequisites: /collections/infomap_models/sf/wordlist /collections/infomap_models/sf/dic /collections/infomap_models/sf/numDocs Mon Nov 3 12:05:43 EST 2008 .................................................. count_wordvec \ -mdir /collections/infomap_models/sf \ -matlab 0 \ -precontext 15 \ -postcontext 15 \ -rows 20000 \ -columns 1000 \ -col_labels_from_file 0 \ -col_label_file "" model data dir is "/collections/infomap_models/sf". count_wordvec.c: looking for 12805 rows which had better match 12805 Reading the dictionary... Opening File for "r": "/collections/infomap_models/sf/dic" Opening File for "r": "/collections/infomap_models/sf/numDocs" Initializing row indices...Done. Initializing column indices...Done. Allocating matrix memory...done. Initializing matrix...done. model data dir is "/collections/infomap_models/sf". count_wordvec.c: about to call process_wordlist Entering process_wordlist. About to call initialize_wordlist. Opening File for "r": "/collections/infomap_models/sf/wordlist" Returned from initialize_wordlist. Writing the co-occurrence matrix. Entering write_matrix_svd; rows = 12805 and columns = 1000. Opening File for "w": "/collections/infomap_models/sf/coll" Opening File for "w": "/collections/infomap_models/sf/indx" .................................................. Finishing target: /collections/infomap_models/sf/coll ================================================== ================================================== Building target: /collections/infomap_models/sf/left Prerequisites: /collections/infomap_models/sf/coll /collections/infomap_models/sf/indx Mon Nov 3 12:05:45 EST 2008 .................................................. cd /collections/infomap_models/sf && rm -f svd_diag left \ rght sing cd /collections/infomap_models/sf && svdinterface \ -singvals 100 \ -iter 100 This is svdinterface. Writing to: left Writing to: rght Writing to: sing Writing to: svd_diag Reading: indx Reading: indx Reading: coll /bin/sh: line 2: 8375 Segmentation fault svdinterface -singvals 100 -iter 100 make: *** [/collections/infomap_models/sf/left] Error 139 Thanks in advance. Regard,----------------------------------- Amir Hossein Jadidinejad Master of Computer Science Islamic Azad University, Iran Home Page: http://jadidi.info E-Mail : am...@ja... , ami...@ya... |
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From: Lihong Su <su...@em...> - 2008-10-08 15:17:10
|
Dear Sir,
I run ./configure on CYGWIN_NT-5.1.
The output is the following:
---------------------------------------------------
./configure: line 13:'$\r': command not found
./configure: line 21: syntax error near unexpected token 'elif'
'/configure: line 21:elif test -n "${BASH_VERSION+set}" && (set -o
posix) >/dev/null 2 >&1; then
---------------------------------------------------
What happened ? How I am fix it? Thanks.
Best wishes,
Lihong
|
|
From: Lihong Su <lih...@ya...> - 2008-10-08 15:02:13
|
Dear Sir,
I run ./configure on CYGWIN_NT-5.1.
The following is output:
-------------------------------------------------
./configure: line 13: $'\r': command not found
./configure: line 21: syntax error near unexpected token 'elif'
'/configure: line 21: 'elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2 >&1; then
-------------------------------------------------
What happened? How can I fix it? Thanks.
Best wishes,
Lihong
|
|
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From: Bertram, A. <ber...@um...> - 2008-09-25 15:04:50
|
Hi Emad,
What works for me on Ubuntu:
tar xzf infomap-nlp-0.8.6.tar.gz
cd infomap-nlp-0.8.6/
find . -type f -exec sed -e 's/gdbm\/ndbm.h/gdbm-ndbm.h/' -i {} \;
./configure
make
make install
You, of course, may want to set your own flags to this as well. Also, you'll need the libgdbm and libgdbm-dev packages installed.
The problem is that the ndbm.h file is put in different places under different flavors of linux. Furthermore these two places happen to conflict in ways that make trouble for autoconf. The solution I suggested here will tell configure to look in the right place for your flavor of linux.
Cheers,
Albert Bertram
________________________________
From: Emad Nawfal (???? ????) [mailto:ema...@gm...]
Sent: Wed 9/24/2008 6:37 PM
To: inf...@li...
Subject: [infomap-nlp-users] n
Hi,
I'm trying to install infomap on my machine, but I get the following message:
configure has detected that you do not have an
appropriate ndbm header file installed on your
system. Compilation cannot proceed. Please install
ndbm.h or gdbm/ndbm.h on your system, or write to
inf...@li... for advice.
Is there any way this can be solved? I tried looking for the missing thing but could not find it. I have an Ubuntu Linux and I'm not a professional unix user.
Thank you
--
?? ???? ?????? ????? ????? ??? ???? ??? ????? ?? ?????? ????????.....???? ???????
"No victim has ever been more repressed and alienated than the truth"
Emad Soliman Nawfal
Indiana University, Bloomington
http://emnawfal.googlepages.com <http://emnawfal.googlepages.com/>
--------------------------------------------------------
|
|
From: E. N. (ع. ن. <ema...@gm...> - 2008-09-24 22:38:17
|
2008/9/24 Emad Nawfal (عماد نوفل) <ema...@gm...> > Hi, > I'm trying to install infomap on my machine, but I get the following > message: > configure has detected that you do not have an > appropriate ndbm header file installed on your > system. Compilation cannot proceed. Please > install > ndbm.h or gdbm/ndbm.h on your system, or write to > inf...@li... for > advice. > > > Is there any way this can be solved? I tried looking for the missing thing > but could not find it. I have an Ubuntu Linux and I'm not a professional > unix user. > Thank you > -- > لا أعرف مظلوما تواطأ الناس علي هضمه ولا زهدوا في إنصافه كالحقيقة.....محمد > الغزالي > "No victim has ever been more repressed and alienated than the truth" > > Emad Soliman Nawfal > Indiana University, Bloomington > http://emnawfal.googlepages.com > -------------------------------------------------------- > -- لا أعرف مظلوما تواطأ الناس علي هضمه ولا زهدوا في إنصافه كالحقيقة.....محمد الغزالي "No victim has ever been more repressed and alienated than the truth" Emad Soliman Nawfal Indiana University, Bloomington http://emnawfal.googlepages.com -------------------------------------------------------- |
|
From: E. N. (ع. ن. <ema...@gm...> - 2008-09-24 22:37:38
|
Hi,
I'm trying to install infomap on my machine, but I get the following
message:
configure has detected that you do not have an
appropriate ndbm header file installed on your
system. Compilation cannot proceed. Please install
ndbm.h or gdbm/ndbm.h on your system, or write to
inf...@li... for advice.
Is there any way this can be solved? I tried looking for the missing thing
but could not find it. I have an Ubuntu Linux and I'm not a professional
unix user.
Thank you
--
لا أعرف مظلوما تواطأ الناس علي هضمه ولا زهدوا في إنصافه كالحقيقة.....محمد
الغزالي
"No victim has ever been more repressed and alienated than the truth"
Emad Soliman Nawfal
Indiana University, Bloomington
http://emnawfal.googlepages.com
-------------------------------------------------------- |
|
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