Re: [Inchworm-users] inchworm "make"

[Brian J H. <bh...@br...>]

Hi Kurt,

You'll need a more modern version of the GCC compiler suite to build it.
 The old versions are not compatible with openMP.

Best,

-b

On Tue, May 24, 2011 at 4:14 PM, Kurt Showmaker <kc...@ms...> wrote:

> Hello,
> I am trying to install inchworm, and do not think it is installing
> correctly.
> When I run the "make" command I get the errors below.
>
>
>
> make  all-recursive
> make[1]: Entering directory `/hpc/compbio/Kurt/inchworm/inchworm-03132011'
> Making all in src
> make[2]: Entering directory
> `/hpc/compbio/Kurt/inchworm/inchworm-03132011/src'
> g++ -DHAVE_CONFIG_H -I. -I..     -Wall -Wno-deprecated -fopenmp -MT
> Fasta_entry.o -MD -MP -MF .deps/Fasta_entry.Tpo -c -o Fasta_entry.o
> Fasta_entry.cpp
> cc1plus: error: unrecognized command line option "-fopenmp"
> make[2]: *** [Fasta_entry.o] Error 1
> make[2]: Leaving directory
> `/hpc/compbio/Kurt/inchworm/inchworm-03132011/src'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/hpc/compbio/Kurt/inchworm/inchworm-03132011'
> make: *** [all] Error 2
>
> When I subsequently run inchworm I get the following error.
> "-bash: .inchworm: cannot execute binary file.
>
>
> Thank You for your consideration, and please advise.
> Kurt Showmaker
>
>
> --
> Kurt Showmaker
>
>
> Institute for Genomics, Biocomputing, and Biotechnology
> Graduate Research Assistant
> Mississippi State University
> Email:kc...@ms...
> Cell:573-427-0060
>
>
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-- 
-- 
Brian J. Haas
Manager, Bioinformatics Outreach, Genome Annotation and Analysis
The Broad Institute
http://broad.mit.edu/~bhaas