https://sourceforge.net/p/imrep/wiki/Installation%2520instructions/Recent changes to Installation instructionsenFri, 18 Nov 2016 07:28:45 -0000https://sourceforge.net/p/imrep/wiki/Installation%2520instructions/<div class="markdown_content"><p>ImReP is written in (<a class="" href="https://www.python.org/" rel="nofollow">Python 2.7</a>) programming language. In order to properly use ImReP, first, download its source code from <a class="" href="https://github.com/mandricigor/imrep" rel="nofollow">https://github.com/mandricigor/imrep</a> to your server and make sure that the following dependencies are met:</p> <ul> <li><a class="" href="http://biopython.org/" rel="nofollow">Biopython</a></li> <li><a class="" href="https://pypi.python.org/pypi/intervaltree/2.0.4" rel="nofollow">IntervalTree</a></li> <li><a class="" href="https://pypi.python.org/pypi/jellyfish" rel="nofollow">jellyfish</a></li> <li><a class="" href="http://www.numpy.org/" rel="nofollow">NumPy</a></li> <li><a class="" href="https://networkx.github.io/" rel="nofollow">NetworkX</a></li> <li><a class="" href="http://www.daimi.au.dk/%7Emailund/suffix_tree.html" rel="nofollow">SuffixTree</a></li> </ul> <p>In order to check that ImReP is installed properly, run </p> <div class="codehilite"><pre><span class="nv">$ </span>python imrep.py -h </pre></div> <p>from your command line. You should see the help message.</p></div>Igor MandricFri, 18 Nov 2016 07:28:45 -0000https://sourceforge.net4a35aa924bc1a3429026a4983b4304cfe86c76f9