https://sourceforge.net/p/imrep/wiki/Examples/Recent changes to ExamplesenFri, 18 Nov 2016 07:38:03 -0000https://sourceforge.net/p/imrep/wiki/Examples/<div class="markdown_content"><p>The very basic way to run ImReP is to use the following command:</p> <div class="codehilite"><pre><span class="nv">$ </span>python imrep.py reads.fastq clonotypes.txt </pre></div> <p>In case if the user is targeted at assembling CDR3 regions from IGH chain, it should be specified like this:</p> <div class="codehilite"><pre><span class="nv">$ </span>python imrep.py -c IGH reads.fastq clonotypes.txt </pre></div> </div>Igor MandricFri, 18 Nov 2016 07:38:03 -0000https://sourceforge.netd09ea7a94784cd48a4fcfd414592663d218f6c85