#29 MGD is more than genes

[Chris Mungall]

• MGI:5317033 is a reference, this doesn't work: http://identifiers.org/mgd/MGI:5317033
• MGI:3621984 is an allele, so this doesn't work: http://identifiers.org/mgd/MGI:3621984

I think if you change the prefix from

http://www.informatics.jax.org/marker/

to the more general

http://www.informatics.jax.org/accession/

This will be fixed. I will have someone from MGD comments

[Chris Mungall]

btw we use the /accession/ pattern in the GO registry

[Anonymous]

[Anonymous]

[Harold J. Drabkin]

In the GO.xrf_abbs
Note the url syntax
MGI: must prefix the MGI:xxxxx, since the MGI in the identifier is part of the identifier

abbreviation: MGI
database: Mouse Genome Informatics
generic_url: http://www.informatics.jax.org/
local_id_syntax: MGI:[0-9]{5,}
url_syntax: http://www.informatics.jax.org/accession/[example_id]
example_id: MGI:MGI:80863
url_example: http://www.informatics.jax.org/accession/MGI:80863
entity_type: SO:0000704 ! gene
local_id_syntax: MGI:[0-9]{5,}
url_syntax: http://www.informatics.jax.org/accession/[example_id]
example_id: MGI:MGI:80863
url_example: http://www.informatics.jax.org/accession/MGI:80863
entity_type: VariO:0001 ! variation

[Harold J. Drabkin]

However, this also works
http://www.informatics.jax.org/accession/MGI:5317033

[Nick Juty]

Thanks to you both for the information. I've updated our record accordingly.

cheers

Nick