Activity for HyLiTE
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HyLiTE released /HyLiTE-2.0.2-py3-none-any.whl
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Murray Cox committed [3cf896]
Update gitignore file
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Update website links
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Update website links
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Updated html files
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Added bug fix information
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Fix silently ignoring lines with spaces rather than tabs
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Fix silently ignoring lines with spaces rather than tabs
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Building new version
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Update version number
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Fix silently ignoring lines with spaces rather than tabs
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Building wheel for new version
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Fix silently ignoring lines with spaces rather than tabs
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Add example zip files
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Updated documentation files
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Python 3 version
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Test passed version 2.0
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Pierre-Yves Dupont modified ticket #6
HyLiTE-merge bug
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RAM consumption when generating .pileup file from .sam entry
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HyLiTE *.expression.txt files do not match samtools idxstats
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Pierre-Yves Dupont committed [dac2d0]
New version added in the README. And changes in...
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Pierre-Yves Dupont committed [c01eae]
Test fixes
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Pierre-Yves Dupont committed [ca9f33]
Fix the bug stopping HyLiTE to work when not in...
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Pierre-Yves Dupont committed [d7d036]
New egg for version 1.7.1
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Mac Campbell created ticket #9
HyLiTE *.expression.txt files do not match samtools idxstats
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RAM consumption when generating .pileup file from .sam entry
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The bug has been fixed. I sent a new egg to Asger Bachmann for test. The new egg...
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Pierre-Yves Dupont committed [678f92]
Changes in the README
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Pierre-Yves Dupont committed [80efb7]
New Egg for version 1.6.3
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Pierre-Yves Dupont committed [a62a94]
Bug in HyLiTE-merge with no reference file fixed
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Pierre-Yves Dupont committed [9a83e6]
Changes in the help message of HyLiTE-merge
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Pierre-Yves Dupont committed [a80f4b]
Bug in HyLiTE-merge with no reference file fixed
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It is linked to the fact that now a reference file is mandatory to write the snp...
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HyLiTE-merge bug
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read summary file wrong numbers
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All tests passed correctly. Version 1.6.2 released.
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Pierre-Yves Dupont committed [2ea9d1]
Final 1.6.2 egg
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Pierre-Yves Dupont committed [bd9cff]
Update the README
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SVN to Git
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Pierre-Yves Dupont committed [ebe5d6]
Move the README file at the root
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Pierre-Yves Dupont committed [eb5d30]
New egg
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Pierre-Yves Dupont committed [07548a]
New egg
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File verification
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Done
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Pierre-Yves Dupont committed [8fab2d]
Tests for the Protocol_Reader including validit...
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Pierre-Yves Dupont committed [863677]
Check if the files given in the protocol file a...
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Pierre-Yves Dupont committed [c509d3]
Minor changes in the documentation
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Pierre-Yves Dupont committed [be7653]
Merge branch 'master' of https://github.com/pyd...
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Pierre-Yves Dupont committed [10c100]
Initial commit
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SVN to Git
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Wandrille Duchemin committed [679b0a]
update of the UML chart
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Documentation update
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added three simple classes
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added Output_manager
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changed date format, testing the commiting
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HyLiTE version 0.1.1:
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Finished the implementation of the vcf-reading ...
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added manuscript, data and supplementary material
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Added:
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Remove useless file made for svn test purpose
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updated manuscript and supp material
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Remove Bak files for SVN
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Broken links fixed in the documentation
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Changes in the option parser. An error message ...
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Mac Campbell committed [bb4f26]
New version of doc discussing default and --ful...
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Added the class Lane That simplify a lot the tr...
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added a __main__ module.
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self explain
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Mac Campbell committed [1f347e]
New version of the doc including comments on in...
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Warning and bug fixes in doc
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added the Snp_Generator class who will coordina...
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added UML and Process chart
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- current code debugged
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params.py added
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HyLiTE version 0.2\n - Fixed the problem result...
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Bug fixed in the output of the snp summary file...
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Built the egg to version 1.5.4. Also edited the...
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Changes in the documentation
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Mac Campbell committed [ead273]
Checked new version of doc
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Cleaning of the repository
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Cleaning of the repository
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have done some debugging and added a very simpl...
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Added options.
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general update
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Commit changes made by Wandrille on the 1.5 ver...
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Bug fix in the classification of the snp and reads
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Added the gestion of options:
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Added options.
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Debugged the code and tested the entire pipelin...
