https://sourceforge.net/p/human-te-dynamics/wiki/Installation/Recent changes to InstallationenTue, 07 Dec 2021 10:22:21 -0000https://sourceforge.net/p/human-te-dynamics/wiki/Installation/<div class="markdown_content"><p><em>Installation is recommended by using subversion.</em></p> <p>Go to a folder where you would like to install the tool and type the command provided at the code-tab <a href="https://sourceforge.net/p/human-te-dynamics/svn/HEAD/tree/">https://sourceforge.net/p/human-te-dynamics/svn/HEAD/tree/</a> or <a href="https://sourceforge.net/p/human-te-dynamics/data/HEAD/tree/">https://sourceforge.net/p/human-te-dynamics/data/HEAD/tree/</a></p> <p>For example:</p> <p>svn checkout --username=fschwarz svn+ssh://fschwarz@svn.code.sf.net/p/human-te-dynamics/svn/ human-te-dynamics-svn<br/> svn checkout --username=fschwarz svn+ssh://fschwarz@svn.code.sf.net/p/human-te-dynamics/data/ human-te-dynamics-data</p> <p>Requirements<br/> You need the following programs installed: <br/> Ascp (Aspera client, <a href="http://download.asperasoft.com/download/docs/scp_client/2.5/aspera-client-unix.html" rel="nofollow">http://download.asperasoft.com/download/docs/scp_client/2.5/aspera-client-unix.html</a>)<br/> curl<br/> samtools<br/> bwa<br/> Mosdepth<br/> Python2<br/> Python3<br/> Java<br/> SimulaTE (https://sourceforge.net/p/simulates)</p></div>Florian SchwarzTue, 07 Dec 2021 10:22:21 -0000https://sourceforge.netd1d94541af9834d44ae8375d400c4d1e6b08c13c