get_line_number_string does not work for PE reads in htseq-count
Analysing high-throughput sequencing data with Python
Brought to you by:
quetzcoatl,
sanders_muc
Menu
▾
▴
#11 get_line_number_string does not work for PE reads in htseq-count
When encountering an error in htseq-count the exception handler throws another error:
"Error: 'itertools.chain' object has no attribute 'get_line_number_string'
[Exception type: AttributeError, raised in count.py:201]"
This seems to be because of the way itertools.chain is used to tie the two pairs together.