From: Neil K. <nk...@ma...> - 2003-02-28 17:56:19
|
We run 3.1.6 on solaris 8 and 9. I've never seen this error.=20 htmerge may fail because sort is running out of disk space. Do you have = enough disk space in /var/tmp for a large sort? If not, tell sort to use = another directory on a partition with lots of free space. Setting TMPDIR = environment variable will cause htmerge to pass this to sort correctly as = -T option. Neil Kohl Manager, ACP-ASIM Online =20 American College of Physicians - American Society of Internal Medicine nk...@ma... 215.351.2638, 800.523.1546 x2638 >>> Vic Engle <sun...@nc...> 02/28/03 10:47AM >>> Hi, I'm trying to get htdig-3.1.6 working on Solaris8. We have gcc3.1=20 installed and I used the recommended flags to get the source compiled=20 and installed. After the install, I edited the htdig.conf file and ran=20 the rundig test script and after a while the script ends with "Abort: = on=20 a single line. I ran rundig with the -v switch and the last few lines of output follow. Any ideas what the problem is? Thanks, --=20 Vic Engle Unix Systems Administrator Duke Clinical Research Deleted, no excerpt:=20 1289/http://dcrihome-dev.dcri.duke.edu/html/proj_lead/trial_manage/manuscri= pts/Editorial_Process_09_26_02.pdf=20 Deleted, no excerpt:=20 1403/http://dcrihome-dev.dcri.duke.edu/html/proj_lead/tt_quarterly_schedule= /2003/april-june.pdf=20 Deleted, no excerpt:=20 1402/http://dcrihome-dev.dcri.duke.edu/html/proj_lead/tt_quarterly_schedule= /2003/jan_march.pdf=20 Deleted, no excerpt:=20 1404/http://dcrihome-dev.dcri.duke.edu/html/proj_lead/tt_quarterly_schedule= /html/the_dcri.htm=20 htmerge: 660 htmerge: 670 htmerge: 680 htmerge: 690 htmerge: 700 htmerge: 710 htmerge: 720 htmerge: 730 htmerge: 740 Deleted, no excerpt:=20 767/http://dcrihome-dev.dcri.duke.edu/html/sops_site.html=20 htmerge: 750 htmerge: 760 htmerge: 770 htmerge: 780 Abort ------------------------------------------------------- This sf.net email is sponsored by:ThinkGeek Welcome to geek heaven. http://thinkgeek.com/sf=20 _______________________________________________ htdig-general mailing list <htd...@li...> To unsubscribe, send a message to <htd...@li...urceforge.= net> with a subject of unsubscribe FAQ: http://htdig.sourceforge.net/FAQ.html |
From: Vic E. <sun...@nc...> - 2003-02-28 20:16:43
|
The system was running out of swap. I added a swap file and now rundig gets a bit further along before ending with the "Abort" message. Monitoring processes when it fails I noticed htnotify was running and consuming a GB of memory. /var/tmp has about 7gb available. Vic Neil Kohl wrote: >We run 3.1.6 on solaris 8 and 9. I've never seen this error. > >htmerge may fail because sort is running out of disk space. Do you have enough disk space in /var/tmp for a large sort? If not, tell sort to use another directory on a partition with lots of free space. Setting TMPDIR environment variable will cause htmerge to pass this to sort correctly as -T option. > > >Neil Kohl >Manager, ACP-ASIM Online >American College of Physicians - American Society of Internal Medicine >nk...@ma... 215.351.2638, 800.523.1546 x2638 > > > > >>>>Vic Engle <sun...@nc...> 02/28/03 10:47AM >>> >>>> >>>> >Hi, > >I'm trying to get htdig-3.1.6 working on Solaris8. We have gcc3.1 >installed and I used the recommended flags to get the source compiled >and installed. After the install, I edited the htdig.conf file and ran >the rundig test script and after a while the script ends with "Abort: on >a single line. > >I ran rundig with the -v switch and the last few lines of output follow. > >Any ideas what the problem is? > >Thanks, > > > -- Vic Engle Unix Systems Administrator Duke Clinical Research 919-668-8653 |
From: Neil K. <nk...@ma...> - 2003-02-28 20:39:30
|
Aha - htnotify, not htmerge. The short term solution is to comment out the call to htnotify in rundig. = If you're not planning on using the htnotify service, you're done. If you want to use htnotify, there's a patch: http://ftp.it.htdig.org/pub/htdig-patches/3.1.6/htnotifyNull.0 Neil Kohl Manager, ACP-ASIM Online =20 American College of Physicians - American Society of Internal Medicine nk...@ma... 215.351.2638, 800.523.1546 x2638 >>> Vic Engle <sun...@nc...> 02/28/03 03:16PM >>> The system was running out of swap. I added a swap file and now rundig=20 gets a bit further along before ending with the "Abort" message.=20 Monitoring processes when it fails I noticed htnotify was running and=20 consuming a GB of memory. /var/tmp has about 7gb available. Vic Neil Kohl wrote: >We run 3.1.6 on solaris 8 and 9. I've never seen this error.=20 > >htmerge may fail because sort is running out of disk space. Do you have = enough disk space in /var/tmp for a large sort? If not, tell sort to use = another directory on a partition with lots of free space. Setting TMPDIR = environment variable will cause htmerge to pass this to sort correctly as = -T option. > > >Neil Kohl >Manager, ACP-ASIM Online =20 >American College of Physicians - American Society of Internal Medicine >nk...@ma... 215.351.2638, 800.523.1546 x2638 > > > =20 > >>>>Vic Engle <sun...@nc...> 02/28/03 10:47AM >>> >>>> =20 >>>> >Hi, > >I'm trying to get htdig-3.1.6 working on Solaris8. We have gcc3.1=20 >installed and I used the recommended flags to get the source compiled=20 >and installed. After the install, I edited the htdig.conf file and ran=20 >the rundig test script and after a while the script ends with "Abort: = on=20 >a single line. > >I ran rundig with the -v switch and the last few lines of output follow. > >Any ideas what the problem is? > >Thanks, > > =20 > --=20 Vic Engle Unix Systems Administrator Duke Clinical Research 919-668-8653 ------------------------------------------------------- This sf.net email is sponsored by:ThinkGeek Welcome to geek heaven. http://thinkgeek.com/sf=20 _______________________________________________ htdig-general mailing list <htd...@li...> To unsubscribe, send a message to <htd...@li...urceforge.= net> with a subject of unsubscribe FAQ: http://htdig.sourceforge.net/FAQ.html |
From: Vic E. <sun...@nc...> - 2003-02-28 21:01:09
|
After adding a GB swap file rundig gets to the htnotify part before failing. Here is a truss of the process before it aborts. Any ideas? Vic [root@borax-->]ps -ef |grep 21705 root 24150 7716 0 15:48:01 pts/7 0:00 grep 21705 root 21705 8024 48 15:38:26 pts/6 8:12 /export/www/htdig/bin/htnotify [root@borax-->]truss -p 21705 brk(0x40117E48) = 0 brk(0x80117E48) Err#11 EAGAIN sigaction(SIGABRT, 0x00000000, 0xFFBEEF68) = 0 llseek(0, 0, SEEK_CUR) = 4508967 sigaction(SIGABRT, 0xFFBEEE38, 0xFFBEEEB8) = 0 sigfillset(0xFF1428A8) = 0 sigprocmask(SIG_UNBLOCK, 0xFFBEEEE8, 0x00000000) = 0 getpid() = 21705 [8024] kill(21705, SIGABRT) = 0 Received signal #6, SIGABRT [default] siginfo: SIGABRT pid=21705 uid=0 *** process killed *** [root@borax-->] Neil Kohl wrote: >We run 3.1.6 on solaris 8 and 9. I've never seen this error. > >htmerge may fail because sort is running out of disk space. Do you have enough disk space in /var/tmp for a large sort? If not, tell sort to use another directory on a partition with lots of free space. Setting TMPDIR environment variable will cause htmerge to pass this to sort correctly as -T option. > > >Neil Kohl >Manager, ACP-ASIM Online >American College of Physicians - American Society of Internal Medicine >nk...@ma... 215.351.2638, 800.523.1546 x2638 > > > > >>>>Vic Engle <sun...@nc...> 02/28/03 10:47AM >>> >>>> >>>> >Hi, > >I'm trying to get htdig-3.1.6 working on Solaris8. We have gcc3.1 >installed and I used the recommended flags to get the source compiled >and installed. After the install, I edited the htdig.conf file and ran >the rundig test script and after a while the script ends with "Abort: on >a single line. > >I ran rundig with the -v switch and the last few lines of output follow. > >Any ideas what the problem is? > >Thanks, > > > -- Vic Engle Unix Systems Administrator Duke Clinical Research 919-668-8653 |