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#7 Write hSDM output to netcdf

2.0
open
Adam M. Wilson
None
2014-10-03
2014-10-02
Adam M. Wilson
No

Adding functions to write hSDM output to netcdf format to facilitate multi-model and multi-species model comparisons and evaluation.

Discussion

  • Adam M. Wilson

    Adam M. Wilson - 2014-10-02

    I've added https://sourceforge.net/p/hsdm/code/ci/dev/tree/examples/hSDM.nc_examples.R this example script to illustrate this the existing functions for two simple models. The challenge will be to make the hSDM.nc function work will all types of models and options. But I think using netcdf and embedding metadata (species, model details, etc.) will be a really useful addition for big (multi-model, multi-species) projects.

     

  • Adam M. Wilson

    Adam M. Wilson - 2014-10-02
    • Description has changed:

    Diff:

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-I'm adding functions to write hSDM output to netcdf format to facilitate multi-model and multi-species model comparisons and evaluation.  
+Adding functions to write hSDM output to netcdf format to facilitate multi-model and multi-species model comparisons and evaluation.
     

  • Adam M. Wilson

    Adam M. Wilson - 2014-10-03

    The current version hSDM.nc works, but creates a complete copy of the input data in each run of each model of output - wasteful. So perhaps better to to write a 'modelinput' file with the input (covariates and occurrence) data instead of embedding it all in the each output file (which is wasteful for multi-model comparisons in large regions).

     

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