Re: [HAPI-devel] Parser dropping 1 empty repeat on an OBX-5 each time you parse

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Hi Ian,

I turned this into a unit test, and it seems to give me the expected
results:

       String msg =
"MSH|^~\\&|HNAM|CL|CL_RADNET|CL|20110628095233||ORU^R01|Q2301030099T1904270849|P|2.4\r"
               + "PID|1||10011682^^^CL_MRN
Pool^^CD:237968946|60683166^^^DONOTSEND^^CD:237968946|CLABTEST^ONE||19500101120000|F||C|34605
W 12 MILE RD^^FARM
MILLS^MN^48331-3263^CD:309221^CD:756^^CD:637908|CD:637908|(248)489-6000^CD:170||CD:151|M|CD:3391461|606831661088^^^DONOTSEND^FIN
NBR^CD:237968946||||CD:654655774|||0|||CD:654897458\r"
               +
"PV1|1|Inpatient|MS^0414^1^CL^^^MMCCN|3|||5332^Rahiman^Abdul|||MED|MS|||1|||5332^Rahiman^Doctor|A||60|||||||||||||||||||CL||Active|||20110329113000\r"
               +
"ORC|NW|3415770735^HNAM_ORDERID|||RL||||20110628095142|71573^Doctor^Janet^D^^^^^DONOTSEND^^^^COMMUNITY
DR NBR~70988^Doctor^Janet^D^^^^^DONOTSEND^^^^Personnel Primary
Identifier~FHJDB2293^Doctor^Janet^D^^^^^DONOTSEND^^^^External
Identifier~T^Doctor^Janet^D^^^^^DONOTSEND^^^^CD:296695676|||||20110628095231|||CD:2562^Written|71573^Doctor^Janet^D^^^^^DONOTSEND^^^^COMMUNITY
DR NBR~70988^Doctor^Janet^D^^^^^DONOTSEND^^^^Personnel Primary
Identifier~FHJDB2293^Doctor^Janet^D^^^^^DONOTSEND^^^^External
Identifier~T^Doctor^Janet^D^^^^^DONOTSEND^^^^CD:296695676\r"
               + "OBR|1|3415770735^HNAM_ORDERID||CL987^MRA Head w and w/o
Contrast|||||||||||Rad Type&Rad
Type|||||00000MR20110001703^HNA_ACCN~8546871^HNA_ACCNID~7515376^HNA_PACSID|CD:232990825|20110628095231||Magnetic
Resonance Imaging|||1^^0^20110628095100^^RT||||^Dizziness\r"
               + "OBX|1|TX|20725^ROUTINE
HEMATOLOGY|H7800-4|This~Is~A~Report~~~~~||||||I|||200704021122\r"
               + "NTE|1|P|Special Instructions-\r";

       Parser p = new GenericParser();

       Message hapiMsg;

       // The parse method performs the actual parsing

       hapiMsg = p.parse(msg);

       ORU_R01_OBSERVATION obx = ((ORU_R01)
hapiMsg).getPATIENT_RESULT(0).getORDER_OBSERVATION(0).getOBSERVATION(0);
       assertEquals("This",
obx.getOBX().getObx5_ObservationValue()[0].encode());
       assertEquals("Is",
obx.getOBX().getObx5_ObservationValue()[1].encode());
       assertEquals("A",
obx.getOBX().getObx5_ObservationValue()[2].encode());
       assertEquals("Report",
obx.getOBX().getObx5_ObservationValue()[3].encode());
       assertEquals("",
obx.getOBX().getObx5_ObservationValue()[4].encode());
       assertEquals("",
obx.getOBX().getObx5_ObservationValue()[5].encode());
       assertEquals("",
obx.getOBX().getObx5_ObservationValue()[6].encode());
       assertEquals("",
obx.getOBX().getObx5_ObservationValue()[7].encode());

Cheers,
James

On Mon, Nov 30, 2015 at 10:59 PM, Ian Vowles <Ian...@he...>
wrote:

> We have been having some trouble with textual OBX-5’s which have repeats
> used to indicate each line of a report when some empty repeats exist to
> denote empty lines for formatting.
>
> Is there a way to overcome this?
>
> The following example demonstrates the problem
>
>
>
> Thanks
>
> Ian
>
>
>
> package hapiexamples;
>
>
>
> import ca.uhn.hl7v2.HL7Exception;
>
> import ca.uhn.hl7v2.app.ApplicationException;
>
> import ca.uhn.hl7v2.model.Message;
>
> import ca.uhn.hl7v2.model.v24.message.ORU_R01;
>
> import ca.uhn.hl7v2.parser.GenericParser;
>
> import ca.uhn.hl7v2.parser.Parser;
>
> import java.io.IOException;
>
>
>
> /**
>
> *
>
> * @author VowlesI
>
> */
>
> public class OruR01RepeatsInObx5 {
>
>
>
>     public static void main(String[] args) throws HL7Exception,
> ApplicationException, IOException {
>
>         String msg =
> "MSH|^~\\&|HNAM|CL|CL_RADNET|CL|20110628095233||ORU^R01|Q2301030099T1904270849|P|2.4\r"
>
>                 + "PID|1||10011682^^^CL_MRN
> Pool^^CD:237968946|60683166^^^DONOTSEND^^CD:237968946|CLABTEST^ONE||19500101120000|F||C|34605
> W 12 MILE RD^^FARM
> MILLS^MN^48331-3263^CD:309221^CD:756^^CD:637908|CD:637908|(248)489-6000^CD:170||CD:151|M|CD:3391461|606831661088^^^DONOTSEND^FIN
> NBR^CD:237968946||||CD:654655774|||0|||CD:654897458\r"
>
>                 +
> "PV1|1|Inpatient|MS^0414^1^CL^^^MMCCN|3|||5332^Rahiman^Abdul|||MED|MS|||1|||5332^Rahiman^Doctor|A||60|||||||||||||||||||CL||Active|||20110329113000\r"
>
>                 +
> "ORC|NW|3415770735^HNAM_ORDERID|||RL||||20110628095142|71573^Doctor^Janet^D^^^^^DONOTSEND^^^^COMMUNITY
> DR NBR~70988^Doctor^Janet^D^^^^^DONOTSEND^^^^Personnel Primary
> Identifier~FHJDB2293^Doctor^Janet^D^^^^^DONOTSEND^^^^External
> Identifier~T^Doctor^Janet^D^^^^^DONOTSEND^^^^CD:296695676|||||20110628095231|||CD:2562^Written|71573^Doctor^Janet^D^^^^^DONOTSEND^^^^COMMUNITY
> DR NBR~70988^Doctor^Janet^D^^^^^DONOTSEND^^^^Personnel Primary
> Identifier~FHJDB2293^Doctor^Janet^D^^^^^DONOTSEND^^^^External
> Identifier~T^Doctor^Janet^D^^^^^DONOTSEND^^^^CD:296695676\r"
>
>                 + "OBR|1|3415770735^HNAM_ORDERID||CL987^MRA Head w and w/o
> Contrast|||||||||||Rad Type&Rad
> Type|||||00000MR20110001703^HNA_ACCN~8546871^HNA_ACCNID~7515376^HNA_PACSID|CD:232990825|20110628095231||Magnetic
> Resonance Imaging|||1^^0^20110628095100^^RT||||^Dizziness\r"
>
>                 + "OBX|1|TX|20725^ROUTINE
> HEMATOLOGY|H7800-4|This~Is~A~Report~~~~~||||||I|||200704021122\r"
>
>                 + "NTE|1|P|Special Instructions-\r";
>
>
>
>         Parser p = new GenericParser();
>
>
>
>         Message hapiMsg;
>
>         // The parse method performs the actual parsing
>
>         hapiMsg = p.parse(msg);
>
>         System.out.println("OBX-5 has " + ((ORU_R01)
> hapiMsg).getPATIENT_RESULT(0).getORDER_OBSERVATION(0).getOBSERVATION(0).getOBX().getObx5_ObservationValueReps());
>
>         hapiMsg.parse(hapiMsg.encode());
>
>         System.out.println("OBX-5 has " + ((ORU_R01)
> hapiMsg).getPATIENT_RESULT(0).getORDER_OBSERVATION(0).getOBSERVATION(0).getOBX().getObx5_ObservationValueReps());
>
>         hapiMsg.parse(hapiMsg.encode());
>
>         System.out.println("OBX-5 has " + ((ORU_R01)
> hapiMsg).getPATIENT_RESULT(0).getORDER_OBSERVATION(0).getOBSERVATION(0).getOBX().getObx5_ObservationValueReps());
>
>         hapiMsg.parse(hapiMsg.encode());
>
>         System.out.println("OBX-5 has " + ((ORU_R01)
> hapiMsg).getPATIENT_RESULT(0).getORDER_OBSERVATION(0).getOBSERVATION(0).getOBX().getObx5_ObservationValueReps());
>
>         hapiMsg.parse(hapiMsg.encode());
>
>         System.out.println("OBX-5 has " + ((ORU_R01)
> hapiMsg).getPATIENT_RESULT(0).getORDER_OBSERVATION(0).getOBSERVATION(0).getOBX().getObx5_ObservationValueReps());
>
>         hapiMsg.parse(hapiMsg.encode());
>
>         System.out.println("OBX-5 has " + ((ORU_R01)
> hapiMsg).getPATIENT_RESULT(0).getORDER_OBSERVATION(0).getOBSERVATION(0).getOBX().getObx5_ObservationValueReps());
>
>         hapiMsg.parse(hapiMsg.encode());
>
>         System.out.println("OBX-5 has " + ((ORU_R01)
> hapiMsg).getPATIENT_RESULT(0).getORDER_OBSERVATION(0).getOBSERVATION(0).getOBX().getObx5_ObservationValueReps());
>
>     }
>
> }
>
>
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