hg38 package

Brought to you by: ccpan

Last Update: 2026-01-30

Get an email when there's a new version of hg38 package

hg38 version of the pipelines for
whole exome sequencing: exome_test38.sh
wole transcription sequencing: rna_test38.sh
somatic calling: somatic38.sh
SV detect: svdetect38.sh, meerkat38.sh
cnv: svdetectcnv38.sh, contra38.sh, cnvkit38.sh
*** Mutect2 instead of haptotypecaller is used to call variants in DNA-seq.

Project Activity

See All Activity >

Follow hg38 package

hg38 package Web Site

Other Useful Business Software

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Start Free

Rate This Project

User Reviews

Be the first to post a review of hg38 package!

Additional Project Details

Registered

2024-09-18

Report inappropriate content

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Start Free

Recommended Projects

Vancouver Short Read Analysis Package
This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
SPLITREAD
Detection of structural variants and indels from Genome/Exome sequencing data
Increment_Ratio_of_Coverage
Method for CNV detection
TFAST
Software for analysis of afSELEX-seq data
SNooPer
A machine learning-based method for somatic variant identification from low-pass next-generation sequencing.