hg38 package

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Last Update: 2026-01-30

hg38 version of the pipelines for
whole exome sequencing: exome_test38.sh
wole transcription sequencing: rna_test38.sh
somatic calling: somatic38.sh
SV detect: svdetect38.sh, meerkat38.sh
cnv: svdetectcnv38.sh, contra38.sh, cnvkit38.sh
*** Mutect2 instead of haptotypecaller is used to call variants in DNA-seq.

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2024-09-18

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