#2 HeatmapGenerator unable to install

[Shamim Rahman]

Hi Bohdan
Can't install onto El Capitan, getting this error:
Last login: Thu Mar 3 15:59:15 on ttys000
dyn1150-74:~ shamim$ /Applications/HeatmapGenerator4_MacOSX/HeatmapGenerator4 ; exit;
dyld: Library not loaded: /usr/local/lib/libpng16.16.dylib
Referenced from: /Applications/HeatmapGenerator4_MacOSX/HeatmapGenerator4
Reason: image not found
Trace/BPT trap: 5
logout
Saving session...
...copying shared history...
...saving history...truncating history files...
...completed.

[Process completed]
Any help?

[Bohdan Khomtchouk]

Hi Shamim,
We are currently working on developing a HeatmapGenerator version compatible with OS X Capitan. We are familiar with this error that you received. Meanwhile, could you please check if any of the older HeatmapGenerator programs work for you?
Thank you,
Bohdan
P.S. If you are still experiencing difficulties with HeatmapGenerator, please consider: http://biorxiv.org/content/biorxiv/early/2016/02/25/034694.full.pdf

[Bohdan Khomtchouk]

Hi Shamim,

HeatmapGenerator5 is now available, with full support for OS X 10.11.

Best wishes,
Bohdan

[Shamim Rahman]

Hi Bohdan
That's awesome, thanks. The program now loads in OS X. Unfortunately, it does not generate a heatmap from my tab-delimited file. It's a very large file, but does look arranged appropriately when compared to the Example.txt file.

The error I get is:
**> Last login: Mon Mar 14 13:23:16 on ttys000

/Users/shamim/Downloads/HeatmapGenerator5_MacOSX/HeatmapGenerator5 ; exit;
dyn1195-76:~ shamim$ /Users/shamim/Downloads/HeatmapGenerator5_MacOSX/HeatmapGenerator5 ; exit;
-1
size is 82
size is executable_path=/Users/shamim/Downloads/HeatmapGenerator5_MacOSX
path is : executable_path=/Users/shamim/Downloads/HeatmapGenerator5_MacOSX/HeatmapGenerator5
working directory is /Users/Shamim
past loading
Filename was '/Users/Shamim/Google Drive/PhD/Data/Lipidomics/Panos WorkDay HeatMap.txt'
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
line 1 did not have 9 elements
Calls: HeatmapGenerator -> read.table -> scan
Execution halted
Segmentation fault: 11
logout
Saving session...
...copying shared history...
...saving history...truncating history files...
...completed.

[Process completed]**

The txt file has 5 columns and approx 7500 rows of data, where the first column and first row are headers
Thanks
Shamim

[Bohdan Khomtchouk]

Hi Shamim,

I think that your input may be formatted incorrectly. Can you please send me the first few rows of your file so that I can see what it looks like?

Thanks,
Bohdan