File	Date	Author	Commit
DOM4JHelper	2017-06-01	Bruce Pascal	[151c61] Initial commit
HDXWorkBench	2017-06-01	Bruce Pascal	[151c61] Initial commit
IntrinsicExchange	2017-06-01	Bruce Pascal	[151c61] Initial commit
JMSPeakML	2017-06-01	Bruce Pascal	[151c61] Initial commit
JQmass	2017-06-01	Bruce Pascal	[151c61] Initial commit
PeptideMSFinder	2017-06-01	Bruce Pascal	[151c61] Initial commit
peptidemsfilter	2017-06-01	Bruce Pascal	[151c61] Initial commit
.DS_Store	2017-06-01	Bruce Pascal	[151c61] Initial commit
CONTRIBUTING.txt	2017-06-01	Bruce Pascal	[151c61] Initial commit
LICENSE.txt	2017-06-01	Bruce Pascal	[151c61] Initial commit
PROJECT_SUMMARY.txt	2017-06-01	Bruce Pascal	[151c61] Initial commit
README.txt	2017-06-01	Bruce Pascal	[151c61] Initial commit

Read Me

Project Summary:
HDX WORKBENCH IS AN INTEGRATED SOFTWARE PLATFORM DESIGNED SPECIFICALLY TO ENHANCE THE ANALYSIS OF HYDROGEN/DEUTERIUM EXCHANGE (HDX) MASS SPECTROMETRY DATA. BUILDING UPON THE EXPERIENCE FROM DEVELOPMENT OF THE DEUTERATOR AND HD DESKTOP, IT INTEGRATES TOOLS FOR DATA EXTRACTION WITH VISUALIZATION COMPONENTS WITHIN A SINGLE DESKTOP APPLICATION. 

THE SOFTWARE HAS BEEN DESIGNED TO BE A COMPREHENSIVE SOLUTION, AND EMPHASIS WAS PLACED ON ACHIEVING THREE MAIN GOALS OF INCREASED ANALYSIS SPEED; USER-FRIENDLY GRAPHIC INTERFACE; AND STRONG SUPPORT FOR LARGE HDX DATA SETS. THE SOFTWARE IS CURRENTLY LIMITED TO THERMO and WATERS INSTRUMENT FILE TYPES, RUNS ON THE WINDOWS 64 BIT PLATFORM.

To Install the software you will have to install the following free software libraries:

QMass/Emass by Alan Rockwood
https://www.ncbi.nlm.nih.gov/pubmed/21619291



Java jar libraries:
CSV
CSVLibrary
bcprov
colorutils
commons-math
DistLib
biojava
freehep
jcommon
jfreechart
jide
junit
ValidationAPI