Re: [GUSDEV] wdk toysite

[<mro...@cs...>]

Thank you for your answers,

well we decided to do a clean re-install and we got up to:

    wdkCache -model toyModel -new

    log4j:WARN No appenders could be found for logger
    (org.apache.commons.digester.Digester.sax).

    log4j:WARN Please initialize the log4j system properly.

    Making cache table gusdb.QueryInstance

    Creating sequence gusdb.QueryInstance_pkseq

    Done

    Command succeeded in 0.348 seconds

On the old notes we noticed that in the last install, at the same place
(creating the wdkCache) we got the same warnings and we ignored them,
this time we want to fix them before we continue,

There is this file called log4j.properties  at gus_home/config

  ### direct log messages to stdout ###
  log4j.appender.stdout=org.apache.log4j.ConsoleAppender
  log4j.appender.stdout.Target=System.out
  log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
  log4j.appender.stdout.layout.ConversionPattern=%d{ABSOLUTE} %5p %c{1}:%L
- %m%n

  #log4j.appender.file=org.apache.log4j.FileAppender
  #log4j.appender.file.File=
  #log4j.appender.file.Append = false
  #log4j.appender.file.layout=org.apache.log4j.PatternLayout
  #log4j.appender.file.layout.ConversionPattern=%d{ABSOLUTE} %5p %c{1}:%L
- %m%n

  ### set log levels - for more verbose logging change 'info' to 'debug'  
###

  log4j.rootLogger=info, stdout
  #log4j.category.org.apache.commons=warn, stdout
  #log4j.category.org.gusdb.dba.model=debug, file
  #log4j.category.org.gusdb.dba.util=debug, stdout, file
  #log4j.category.org.gusdb.dba.reader=debug, stdout, file
  #log4j.category.org.gusdb.dba.writer=debug, stdout, file


which seems to be the one causing the problem,

We are looking for instructions on how to modify this file for the
wdkToySite, please help.


Thank you very much

Michael


> hi michael-
>
> i suspect tomcat is not seeing your controller jar file.
>
> steve
>
> mro...@cs... wrote:
>> Hello folks;
>>
>> We installed wdk, tomcat 6.0.10 and we are trying to get the wdktoysite
>> to
>> work.
>>
>> Everything compiled and all data files got create.
>>
>> Now when we try to start the site inside tomcat we get the following
>> errors:
>>
>> in catalina.log
>> May 16, 2007 7:06:44 PM org.apache.catalina.core.StandardContext start
>> SEVERE: Error listenerSta
>> May 16, 2007 7:06:44 PM org.apache.catalina.core.StandardContext start
>> SEVERE: Context [/wdktoysite] startup failed due to previous errors
>>
>>
>> in localhost.log
>> May 16, 2007 6:46:51 PM org.apache.catalina.core.StandardContext
>> listenerStart
>> SEVERE: Error configuring application listener of class
>> org.gusdb.wdk.controller.ApplicationInitListener
>> java.lang.ClassNotFoundException:
>> org.gusdb.wdk.controller.ApplicationInitListener
>>
>> and then all other errors have the same explanation
>>
>>     java.lang.ClassNotFoundException:
>>     org.gusdb.wdk.controller.ApplicationInitListener
>>
>> Has anybody run into this problem and how was it solved.
>>
>>
>>
>> Thanks
>>
>> Michael Robinson
>> Bioinformatics Research Group (Biorg)
>> Florida International University
>> ECS 254
>> Miami, Florida, USA 33199
>>
>>
>>
>>
>>
>>
>>
>>
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>